Strain Fitness in Rahnella sp. WP5 around EX31_RS01580

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01575 and EX31_RS01580 are separated by 289 nucleotidesEX31_RS01580 and EX31_RS01585 overlap by 1 nucleotides EX31_RS01575: EX31_RS01575 - phage minor tail protein L, at 352,977 to 353,714 _RS01575 EX31_RS01580: EX31_RS01580 - phage tail protein, at 354,004 to 354,342 _RS01580 EX31_RS01585: EX31_RS01585 - phage tail tape measure protein, at 354,342 to 356,672 _RS01585 Position (kb) 354 355Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 353.033 kb on + strandat 353.120 kb on - strand, within EX31_RS01575at 353.135 kb on - strand, within EX31_RS01575at 353.171 kb on + strand, within EX31_RS01575at 353.171 kb on + strand, within EX31_RS01575at 353.172 kb on - strand, within EX31_RS01575at 353.172 kb on - strand, within EX31_RS01575at 353.172 kb on - strand, within EX31_RS01575at 353.172 kb on - strand, within EX31_RS01575at 353.172 kb on - strand, within EX31_RS01575at 353.172 kb on - strand, within EX31_RS01575at 353.181 kb on - strand, within EX31_RS01575at 353.291 kb on - strand, within EX31_RS01575at 353.291 kb on - strand, within EX31_RS01575at 353.362 kb on + strand, within EX31_RS01575at 353.362 kb on + strand, within EX31_RS01575at 353.378 kb on + strand, within EX31_RS01575at 353.379 kb on - strand, within EX31_RS01575at 353.405 kb on + strand, within EX31_RS01575at 353.414 kb on - strand, within EX31_RS01575at 353.437 kb on + strand, within EX31_RS01575at 353.437 kb on + strand, within EX31_RS01575at 353.437 kb on + strand, within EX31_RS01575at 353.438 kb on - strand, within EX31_RS01575at 353.438 kb on - strand, within EX31_RS01575at 353.438 kb on - strand, within EX31_RS01575at 353.438 kb on - strand, within EX31_RS01575at 353.438 kb on - strand, within EX31_RS01575at 353.438 kb on - strand, within EX31_RS01575at 353.438 kb on - strand, within EX31_RS01575at 353.438 kb on - strand, within EX31_RS01575at 353.438 kb on - strand, within EX31_RS01575at 353.438 kb on - strand, within EX31_RS01575at 353.605 kb on + strand, within EX31_RS01575at 353.605 kb on + strand, within EX31_RS01575at 353.606 kb on - strand, within EX31_RS01575at 353.606 kb on - strand, within EX31_RS01575at 353.606 kb on - strand, within EX31_RS01575at 353.727 kb on + strandat 353.727 kb on + strandat 353.728 kb on - strandat 353.747 kb on + strandat 353.748 kb on - strandat 353.749 kb on + strandat 353.750 kb on - strandat 353.750 kb on - strandat 353.750 kb on - strandat 353.801 kb on + strandat 353.841 kb on - strandat 353.841 kb on - strandat 353.954 kb on + strandat 354.252 kb on + strand, within EX31_RS01580at 354.252 kb on + strand, within EX31_RS01580at 354.254 kb on + strand, within EX31_RS01580at 354.254 kb on + strand, within EX31_RS01580at 354.282 kb on + strand, within EX31_RS01580at 354.282 kb on + strand, within EX31_RS01580at 354.282 kb on + strand, within EX31_RS01580at 354.283 kb on - strand, within EX31_RS01580at 354.312 kb on + strandat 354.357 kb on - strandat 354.357 kb on - strandat 354.359 kb on - strandat 354.359 kb on - strandat 354.359 kb on - strandat 354.420 kb on - strandat 354.420 kb on - strandat 354.670 kb on + strand, within EX31_RS01585at 354.670 kb on + strand, within EX31_RS01585at 354.671 kb on - strand, within EX31_RS01585at 354.691 kb on + strand, within EX31_RS01585at 354.706 kb on + strand, within EX31_RS01585at 354.719 kb on - strand, within EX31_RS01585at 354.719 kb on - strand, within EX31_RS01585at 354.719 kb on - strand, within EX31_RS01585at 354.729 kb on - strand, within EX31_RS01585at 354.729 kb on - strand, within EX31_RS01585at 354.729 kb on - strand, within EX31_RS01585at 354.731 kb on - strand, within EX31_RS01585at 354.731 kb on - strand, within EX31_RS01585at 354.731 kb on - strand, within EX31_RS01585at 354.746 kb on + strand, within EX31_RS01585at 354.746 kb on + strand, within EX31_RS01585at 354.747 kb on - strand, within EX31_RS01585at 354.749 kb on + strand, within EX31_RS01585at 354.749 kb on + strand, within EX31_RS01585at 354.749 kb on + strand, within EX31_RS01585at 354.750 kb on - strand, within EX31_RS01585at 354.750 kb on - strand, within EX31_RS01585at 354.750 kb on - strand, within EX31_RS01585at 354.751 kb on + strand, within EX31_RS01585at 354.751 kb on + strand, within EX31_RS01585at 354.752 kb on - strand, within EX31_RS01585at 354.752 kb on - strand, within EX31_RS01585at 354.752 kb on - strand, within EX31_RS01585at 354.752 kb on - strand, within EX31_RS01585at 354.752 kb on - strand, within EX31_RS01585at 354.752 kb on - strand, within EX31_RS01585at 354.752 kb on - strand, within EX31_RS01585at 354.752 kb on - strand, within EX31_RS01585at 354.752 kb on - strand, within EX31_RS01585at 354.783 kb on - strand, within EX31_RS01585at 354.835 kb on + strand, within EX31_RS01585at 354.875 kb on + strand, within EX31_RS01585at 354.876 kb on - strand, within EX31_RS01585at 355.075 kb on + strand, within EX31_RS01585at 355.076 kb on - strand, within EX31_RS01585at 355.076 kb on - strand, within EX31_RS01585at 355.130 kb on - strand, within EX31_RS01585at 355.262 kb on + strand, within EX31_RS01585at 355.263 kb on - strand, within EX31_RS01585at 355.263 kb on - strand, within EX31_RS01585at 355.267 kb on - strand, within EX31_RS01585at 355.319 kb on - strand, within EX31_RS01585

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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353,033 + +3.1
353,120 - EX31_RS01575 0.19 -0.8
353,135 - EX31_RS01575 0.21 -0.2
353,171 + EX31_RS01575 0.26 -1.2
353,171 + EX31_RS01575 0.26 +1.1
353,172 - EX31_RS01575 0.26 -0.8
353,172 - EX31_RS01575 0.26 -0.2
353,172 - EX31_RS01575 0.26 -2.0
353,172 - EX31_RS01575 0.26 -0.5
353,172 - EX31_RS01575 0.26 +0.7
353,172 - EX31_RS01575 0.26 +2.0
353,181 - EX31_RS01575 0.28 +1.2
353,291 - EX31_RS01575 0.43 -0.2
353,291 - EX31_RS01575 0.43 +2.4
353,362 + EX31_RS01575 0.52 +1.2
353,362 + EX31_RS01575 0.52 +0.8
353,378 + EX31_RS01575 0.54 -0.8
353,379 - EX31_RS01575 0.54 -1.2
353,405 + EX31_RS01575 0.58 -0.8
353,414 - EX31_RS01575 0.59 +0.7
353,437 + EX31_RS01575 0.62 +1.2
353,437 + EX31_RS01575 0.62 +2.6
353,437 + EX31_RS01575 0.62 +1.0
353,438 - EX31_RS01575 0.62 -0.2
353,438 - EX31_RS01575 0.62 -1.5
353,438 - EX31_RS01575 0.62 -0.2
353,438 - EX31_RS01575 0.62 +1.0
353,438 - EX31_RS01575 0.62 +1.4
353,438 - EX31_RS01575 0.62 +0.8
353,438 - EX31_RS01575 0.62 -2.3
353,438 - EX31_RS01575 0.62 -0.2
353,438 - EX31_RS01575 0.62 -0.2
353,438 - EX31_RS01575 0.62 +0.4
353,605 + EX31_RS01575 0.85 +1.8
353,605 + EX31_RS01575 0.85 -1.2
353,606 - EX31_RS01575 0.85 +0.8
353,606 - EX31_RS01575 0.85 +0.2
353,606 - EX31_RS01575 0.85 +0.5
353,727 + -0.3
353,727 + +1.8
353,728 - -0.2
353,747 + -1.0
353,748 - -0.2
353,749 + -0.3
353,750 - +0.4
353,750 - +0.1
353,750 - -1.8
353,801 + -0.2
353,841 - -2.2
353,841 - +0.6
353,954 + +1.8
354,252 + EX31_RS01580 0.73 -0.5
354,252 + EX31_RS01580 0.73 -3.4
354,254 + EX31_RS01580 0.74 +1.4
354,254 + EX31_RS01580 0.74 +0.8
354,282 + EX31_RS01580 0.82 +1.1
354,282 + EX31_RS01580 0.82 -0.2
354,282 + EX31_RS01580 0.82 +1.8
354,283 - EX31_RS01580 0.82 +0.6
354,312 + -1.0
354,357 - +0.1
354,357 - -2.2
354,359 - -0.0
354,359 - +0.5
354,359 - +0.8
354,420 - -1.8
354,420 - +0.8
354,670 + EX31_RS01585 0.14 -1.1
354,670 + EX31_RS01585 0.14 +0.8
354,671 - EX31_RS01585 0.14 -0.8
354,691 + EX31_RS01585 0.15 +0.6
354,706 + EX31_RS01585 0.16 -1.4
354,719 - EX31_RS01585 0.16 +3.0
354,719 - EX31_RS01585 0.16 -0.8
354,719 - EX31_RS01585 0.16 +1.9
354,729 - EX31_RS01585 0.17 +0.8
354,729 - EX31_RS01585 0.17 -0.8
354,729 - EX31_RS01585 0.17 -0.9
354,731 - EX31_RS01585 0.17 -0.8
354,731 - EX31_RS01585 0.17 +0.8
354,731 - EX31_RS01585 0.17 +1.1
354,746 + EX31_RS01585 0.17 +1.3
354,746 + EX31_RS01585 0.17 -0.3
354,747 - EX31_RS01585 0.17 -0.2
354,749 + EX31_RS01585 0.17 +1.2
354,749 + EX31_RS01585 0.17 -0.2
354,749 + EX31_RS01585 0.17 -2.0
354,750 - EX31_RS01585 0.18 +2.8
354,750 - EX31_RS01585 0.18 -1.2
354,750 - EX31_RS01585 0.18 -0.4
354,751 + EX31_RS01585 0.18 +1.1
354,751 + EX31_RS01585 0.18 -0.2
354,752 - EX31_RS01585 0.18 -0.2
354,752 - EX31_RS01585 0.18 +0.8
354,752 - EX31_RS01585 0.18 +0.8
354,752 - EX31_RS01585 0.18 -0.5
354,752 - EX31_RS01585 0.18 +0.1
354,752 - EX31_RS01585 0.18 +0.2
354,752 - EX31_RS01585 0.18 +1.8
354,752 - EX31_RS01585 0.18 -2.0
354,752 - EX31_RS01585 0.18 -0.2
354,783 - EX31_RS01585 0.19 +0.8
354,835 + EX31_RS01585 0.21 +0.8
354,875 + EX31_RS01585 0.23 +1.1
354,876 - EX31_RS01585 0.23 -1.2
355,075 + EX31_RS01585 0.31 -1.0
355,076 - EX31_RS01585 0.31 +0.8
355,076 - EX31_RS01585 0.31 +0.8
355,130 - EX31_RS01585 0.34 -1.2
355,262 + EX31_RS01585 0.39 +0.4
355,263 - EX31_RS01585 0.40 -1.8
355,263 - EX31_RS01585 0.40 -0.8
355,267 - EX31_RS01585 0.40 -0.2
355,319 - EX31_RS01585 0.42 +1.3

Or see this region's nucleotide sequence