Strain Fitness in Rahnella sp. WP5 around EX31_RS01545

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS25720 and EX31_RS01545 are separated by 154 nucleotidesEX31_RS01545 and EX31_RS01550 overlap by 7 nucleotidesEX31_RS01550 and EX31_RS01555 overlap by 4 nucleotides EX31_RS25720: EX31_RS25720 - hypothetical protein, at 345,778 to 346,185 _RS25720 EX31_RS01545: EX31_RS01545 - hypothetical protein, at 346,340 to 346,585 _RS01545 EX31_RS01550: EX31_RS01550 - hypothetical protein, at 346,579 to 347,550 _RS01550 EX31_RS01555: EX31_RS01555 - host specificity protein J, at 347,547 to 350,753 _RS01555 Position (kb) 346 347Strain fitness (log2 ratio) -2 -1 0 1 2 3at 345.592 kb on - strandat 345.593 kb on + strandat 345.593 kb on + strandat 345.593 kb on + strandat 345.593 kb on + strandat 345.593 kb on + strandat 345.594 kb on - strandat 345.594 kb on - strandat 345.594 kb on - strandat 345.594 kb on - strandat 345.594 kb on - strandat 345.594 kb on - strandat 345.699 kb on - strandat 345.703 kb on - strandat 345.770 kb on + strandat 345.796 kb on - strandat 345.796 kb on - strandat 345.796 kb on - strandat 345.840 kb on + strand, within EX31_RS25720at 345.847 kb on + strand, within EX31_RS25720at 345.848 kb on - strand, within EX31_RS25720at 345.848 kb on - strand, within EX31_RS25720at 345.953 kb on - strand, within EX31_RS25720at 346.025 kb on - strand, within EX31_RS25720at 346.064 kb on + strand, within EX31_RS25720at 346.217 kb on + strandat 346.217 kb on + strandat 346.218 kb on - strandat 346.232 kb on + strandat 346.247 kb on - strandat 346.317 kb on - strandat 346.317 kb on - strandat 346.403 kb on - strand, within EX31_RS01545at 346.423 kb on + strand, within EX31_RS01545at 346.423 kb on + strand, within EX31_RS01545at 346.473 kb on + strand, within EX31_RS01545at 346.601 kb on + strandat 346.602 kb on - strandat 346.602 kb on - strandat 346.605 kb on - strandat 346.605 kb on - strandat 346.605 kb on - strandat 346.616 kb on + strandat 346.616 kb on + strandat 346.617 kb on - strandat 346.617 kb on - strandat 346.631 kb on + strandat 346.632 kb on - strandat 346.632 kb on - strandat 346.632 kb on - strandat 346.694 kb on + strand, within EX31_RS01550at 346.695 kb on - strand, within EX31_RS01550at 346.699 kb on - strand, within EX31_RS01550at 346.700 kb on - strand, within EX31_RS01550at 346.767 kb on + strand, within EX31_RS01550at 346.768 kb on - strand, within EX31_RS01550at 346.772 kb on - strand, within EX31_RS01550at 346.772 kb on - strand, within EX31_RS01550at 346.772 kb on - strand, within EX31_RS01550at 346.772 kb on - strand, within EX31_RS01550at 346.772 kb on - strand, within EX31_RS01550at 346.804 kb on + strand, within EX31_RS01550at 346.855 kb on - strand, within EX31_RS01550at 346.855 kb on - strand, within EX31_RS01550at 346.855 kb on - strand, within EX31_RS01550at 346.870 kb on + strand, within EX31_RS01550at 346.870 kb on + strand, within EX31_RS01550at 346.897 kb on - strand, within EX31_RS01550at 346.897 kb on - strand, within EX31_RS01550at 346.900 kb on - strand, within EX31_RS01550at 346.909 kb on + strand, within EX31_RS01550at 346.924 kb on - strand, within EX31_RS01550at 346.924 kb on - strand, within EX31_RS01550at 346.924 kb on - strand, within EX31_RS01550at 346.958 kb on - strand, within EX31_RS01550at 346.995 kb on + strand, within EX31_RS01550at 347.010 kb on + strand, within EX31_RS01550at 347.080 kb on - strand, within EX31_RS01550at 347.080 kb on - strand, within EX31_RS01550at 347.131 kb on - strand, within EX31_RS01550at 347.137 kb on + strand, within EX31_RS01550at 347.148 kb on + strand, within EX31_RS01550at 347.148 kb on + strand, within EX31_RS01550at 347.150 kb on + strand, within EX31_RS01550at 347.184 kb on + strand, within EX31_RS01550at 347.185 kb on - strand, within EX31_RS01550at 347.186 kb on + strand, within EX31_RS01550at 347.187 kb on - strand, within EX31_RS01550at 347.207 kb on - strand, within EX31_RS01550at 347.240 kb on + strand, within EX31_RS01550at 347.240 kb on + strand, within EX31_RS01550at 347.261 kb on - strand, within EX31_RS01550at 347.261 kb on - strand, within EX31_RS01550at 347.266 kb on - strand, within EX31_RS01550at 347.266 kb on - strand, within EX31_RS01550at 347.268 kb on + strand, within EX31_RS01550at 347.297 kb on - strand, within EX31_RS01550at 347.307 kb on + strand, within EX31_RS01550at 347.360 kb on + strand, within EX31_RS01550at 347.360 kb on + strand, within EX31_RS01550at 347.468 kb on - strandat 347.470 kb on - strandat 347.484 kb on + strandat 347.484 kb on + strandat 347.485 kb on - strandat 347.525 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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345,592 - +0.8
345,593 + -0.1
345,593 + +1.4
345,593 + +0.2
345,593 + -1.2
345,593 + +1.0
345,594 - +0.8
345,594 - +1.4
345,594 - -0.2
345,594 - +0.8
345,594 - +0.7
345,594 - -0.4
345,699 - +0.2
345,703 - -0.5
345,770 + -0.4
345,796 - -0.2
345,796 - +1.1
345,796 - -1.0
345,840 + EX31_RS25720 0.15 -2.0
345,847 + EX31_RS25720 0.17 +3.1
345,848 - EX31_RS25720 0.17 +0.1
345,848 - EX31_RS25720 0.17 -1.3
345,953 - EX31_RS25720 0.43 -1.1
346,025 - EX31_RS25720 0.61 +0.3
346,064 + EX31_RS25720 0.70 +0.2
346,217 + -0.1
346,217 + -0.1
346,218 - -0.9
346,232 + -1.6
346,247 - -1.5
346,317 - +1.5
346,317 - +1.1
346,403 - EX31_RS01545 0.26 -0.7
346,423 + EX31_RS01545 0.34 -2.3
346,423 + EX31_RS01545 0.34 -0.2
346,473 + EX31_RS01545 0.54 +0.0
346,601 + +0.4
346,602 - -0.8
346,602 - +1.4
346,605 - +2.0
346,605 - +1.3
346,605 - +0.4
346,616 + -1.5
346,616 + -0.5
346,617 - +1.8
346,617 - -0.6
346,631 + -0.4
346,632 - +0.8
346,632 - -1.3
346,632 - +0.1
346,694 + EX31_RS01550 0.12 -0.5
346,695 - EX31_RS01550 0.12 -1.8
346,699 - EX31_RS01550 0.12 +2.3
346,700 - EX31_RS01550 0.12 +3.1
346,767 + EX31_RS01550 0.19 +1.2
346,768 - EX31_RS01550 0.19 +0.6
346,772 - EX31_RS01550 0.20 -0.5
346,772 - EX31_RS01550 0.20 +0.8
346,772 - EX31_RS01550 0.20 +1.7
346,772 - EX31_RS01550 0.20 -0.2
346,772 - EX31_RS01550 0.20 +2.3
346,804 + EX31_RS01550 0.23 +0.1
346,855 - EX31_RS01550 0.28 +0.6
346,855 - EX31_RS01550 0.28 +0.2
346,855 - EX31_RS01550 0.28 -0.2
346,870 + EX31_RS01550 0.30 -0.3
346,870 + EX31_RS01550 0.30 +0.8
346,897 - EX31_RS01550 0.33 -2.4
346,897 - EX31_RS01550 0.33 -0.2
346,900 - EX31_RS01550 0.33 +1.1
346,909 + EX31_RS01550 0.34 +2.2
346,924 - EX31_RS01550 0.35 -0.6
346,924 - EX31_RS01550 0.35 +1.6
346,924 - EX31_RS01550 0.35 -0.9
346,958 - EX31_RS01550 0.39 +1.0
346,995 + EX31_RS01550 0.43 +1.4
347,010 + EX31_RS01550 0.44 +0.8
347,080 - EX31_RS01550 0.52 -0.8
347,080 - EX31_RS01550 0.52 -2.2
347,131 - EX31_RS01550 0.57 -1.6
347,137 + EX31_RS01550 0.57 -0.1
347,148 + EX31_RS01550 0.59 -0.8
347,148 + EX31_RS01550 0.59 -1.0
347,150 + EX31_RS01550 0.59 -1.8
347,184 + EX31_RS01550 0.62 +0.8
347,185 - EX31_RS01550 0.62 +0.8
347,186 + EX31_RS01550 0.62 -0.8
347,187 - EX31_RS01550 0.63 -0.5
347,207 - EX31_RS01550 0.65 -0.3
347,240 + EX31_RS01550 0.68 +2.0
347,240 + EX31_RS01550 0.68 -0.8
347,261 - EX31_RS01550 0.70 +0.1
347,261 - EX31_RS01550 0.70 +0.7
347,266 - EX31_RS01550 0.71 -2.0
347,266 - EX31_RS01550 0.71 -1.8
347,268 + EX31_RS01550 0.71 -0.2
347,297 - EX31_RS01550 0.74 +0.4
347,307 + EX31_RS01550 0.75 +0.5
347,360 + EX31_RS01550 0.80 +0.5
347,360 + EX31_RS01550 0.80 -0.3
347,468 - +1.3
347,470 - +0.8
347,484 + -0.3
347,484 + +0.4
347,485 - +0.5
347,525 - -0.3

Or see this region's nucleotide sequence