Strain Fitness in Rahnella sp. WP5 around EX31_RS01490

Experiment: casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS01485 and EX31_RS01490 are separated by 413 nucleotidesEX31_RS01490 and EX31_RS01495 are separated by 16 nucleotides EX31_RS01485: EX31_RS01485 - helix-turn-helix domain-containing protein, at 333,930 to 334,286 _RS01485 EX31_RS01490: EX31_RS01490 - efflux RND transporter periplasmic adaptor subunit, at 334,700 to 335,866 _RS01490 EX31_RS01495: EX31_RS01495 - multidrug efflux RND transporter permease subunit, at 335,883 to 339,035 _RS01495 Position (kb) 334 335 336Strain fitness (log2 ratio) -2 -1 0 1 2 3at 333.761 kb on + strandat 333.837 kb on + strandat 333.915 kb on - strandat 334.071 kb on - strand, within EX31_RS01485at 334.071 kb on - strand, within EX31_RS01485at 334.161 kb on - strand, within EX31_RS01485at 334.166 kb on + strand, within EX31_RS01485at 334.166 kb on + strand, within EX31_RS01485at 334.167 kb on - strand, within EX31_RS01485at 334.167 kb on - strand, within EX31_RS01485at 334.214 kb on + strand, within EX31_RS01485at 334.425 kb on - strandat 334.425 kb on - strandat 334.425 kb on - strandat 334.435 kb on + strandat 334.441 kb on - strandat 334.489 kb on + strandat 334.490 kb on - strandat 334.490 kb on - strandat 334.605 kb on + strandat 334.618 kb on + strandat 334.619 kb on - strandat 334.619 kb on - strandat 334.623 kb on - strandat 334.641 kb on + strandat 334.867 kb on - strand, within EX31_RS01490at 334.902 kb on - strand, within EX31_RS01490at 334.920 kb on - strand, within EX31_RS01490at 335.262 kb on + strand, within EX31_RS01490at 335.263 kb on - strand, within EX31_RS01490at 335.286 kb on + strand, within EX31_RS01490at 335.286 kb on + strand, within EX31_RS01490at 335.287 kb on - strand, within EX31_RS01490at 335.318 kb on + strand, within EX31_RS01490at 335.318 kb on + strand, within EX31_RS01490at 335.318 kb on + strand, within EX31_RS01490at 335.319 kb on - strand, within EX31_RS01490at 335.324 kb on + strand, within EX31_RS01490at 335.471 kb on - strand, within EX31_RS01490at 335.626 kb on + strand, within EX31_RS01490at 335.642 kb on - strand, within EX31_RS01490at 335.651 kb on + strand, within EX31_RS01490at 335.652 kb on - strand, within EX31_RS01490at 335.707 kb on - strand, within EX31_RS01490at 335.708 kb on + strand, within EX31_RS01490at 335.708 kb on + strand, within EX31_RS01490at 335.709 kb on - strand, within EX31_RS01490at 335.719 kb on - strand, within EX31_RS01490at 335.772 kb on + strandat 335.773 kb on - strandat 335.773 kb on - strandat 335.830 kb on + strandat 335.947 kb on + strandat 335.991 kb on + strandat 336.117 kb on + strandat 336.117 kb on + strandat 336.117 kb on + strandat 336.117 kb on + strandat 336.117 kb on + strandat 336.117 kb on + strandat 336.117 kb on + strandat 336.117 kb on + strandat 336.117 kb on + strandat 336.117 kb on + strandat 336.118 kb on - strandat 336.118 kb on - strandat 336.118 kb on - strandat 336.118 kb on - strandat 336.118 kb on - strandat 336.333 kb on + strand, within EX31_RS01495at 336.333 kb on + strand, within EX31_RS01495at 336.333 kb on + strand, within EX31_RS01495at 336.333 kb on + strand, within EX31_RS01495at 336.334 kb on - strand, within EX31_RS01495at 336.334 kb on - strand, within EX31_RS01495at 336.334 kb on - strand, within EX31_RS01495at 336.334 kb on - strand, within EX31_RS01495at 336.357 kb on + strand, within EX31_RS01495at 336.357 kb on + strand, within EX31_RS01495at 336.357 kb on + strand, within EX31_RS01495at 336.358 kb on - strand, within EX31_RS01495at 336.435 kb on + strand, within EX31_RS01495at 336.526 kb on + strand, within EX31_RS01495at 336.527 kb on - strand, within EX31_RS01495at 336.579 kb on + strand, within EX31_RS01495at 336.714 kb on + strand, within EX31_RS01495at 336.714 kb on + strand, within EX31_RS01495at 336.734 kb on + strand, within EX31_RS01495at 336.734 kb on + strand, within EX31_RS01495at 336.734 kb on + strand, within EX31_RS01495at 336.735 kb on - strand, within EX31_RS01495at 336.735 kb on - strand, within EX31_RS01495at 336.740 kb on + strand, within EX31_RS01495

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
remove
333,761 + +1.9
333,837 + -1.3
333,915 - -0.8
334,071 - EX31_RS01485 0.39 -0.2
334,071 - EX31_RS01485 0.39 +0.5
334,161 - EX31_RS01485 0.65 -0.2
334,166 + EX31_RS01485 0.66 +0.5
334,166 + EX31_RS01485 0.66 +0.3
334,167 - EX31_RS01485 0.66 +0.8
334,167 - EX31_RS01485 0.66 +0.8
334,214 + EX31_RS01485 0.80 -0.6
334,425 - +1.0
334,425 - +0.8
334,425 - -0.2
334,435 + +0.8
334,441 - +2.4
334,489 + +0.4
334,490 - -0.8
334,490 - -0.2
334,605 + +0.8
334,618 + +0.2
334,619 - +0.6
334,619 - +0.2
334,623 - +1.8
334,641 + +1.5
334,867 - EX31_RS01490 0.14 +0.6
334,902 - EX31_RS01490 0.17 -0.7
334,920 - EX31_RS01490 0.19 -0.8
335,262 + EX31_RS01490 0.48 +3.2
335,263 - EX31_RS01490 0.48 +0.4
335,286 + EX31_RS01490 0.50 +0.6
335,286 + EX31_RS01490 0.50 +2.0
335,287 - EX31_RS01490 0.50 -0.4
335,318 + EX31_RS01490 0.53 +0.8
335,318 + EX31_RS01490 0.53 -0.3
335,318 + EX31_RS01490 0.53 +0.7
335,319 - EX31_RS01490 0.53 +1.8
335,324 + EX31_RS01490 0.53 +0.7
335,471 - EX31_RS01490 0.66 +0.8
335,626 + EX31_RS01490 0.79 +1.6
335,642 - EX31_RS01490 0.81 -0.2
335,651 + EX31_RS01490 0.81 +0.8
335,652 - EX31_RS01490 0.82 +1.8
335,707 - EX31_RS01490 0.86 -1.2
335,708 + EX31_RS01490 0.86 +1.4
335,708 + EX31_RS01490 0.86 +0.8
335,709 - EX31_RS01490 0.86 +0.1
335,719 - EX31_RS01490 0.87 +3.0
335,772 + +0.4
335,773 - -0.8
335,773 - -0.8
335,830 + +0.4
335,947 + +0.5
335,991 + -1.8
336,117 + +1.6
336,117 + +0.4
336,117 + +1.3
336,117 + +0.2
336,117 + +0.2
336,117 + +0.2
336,117 + -0.8
336,117 + +0.3
336,117 + +0.4
336,117 + +0.0
336,118 - -0.2
336,118 - +1.4
336,118 - +0.2
336,118 - +0.2
336,118 - -1.5
336,333 + EX31_RS01495 0.14 -1.2
336,333 + EX31_RS01495 0.14 -0.2
336,333 + EX31_RS01495 0.14 +0.8
336,333 + EX31_RS01495 0.14 +1.1
336,334 - EX31_RS01495 0.14 -1.8
336,334 - EX31_RS01495 0.14 -0.6
336,334 - EX31_RS01495 0.14 +0.2
336,334 - EX31_RS01495 0.14 -0.0
336,357 + EX31_RS01495 0.15 +0.7
336,357 + EX31_RS01495 0.15 +2.0
336,357 + EX31_RS01495 0.15 +0.3
336,358 - EX31_RS01495 0.15 -1.8
336,435 + EX31_RS01495 0.18 +0.6
336,526 + EX31_RS01495 0.20 +0.8
336,527 - EX31_RS01495 0.20 -0.8
336,579 + EX31_RS01495 0.22 +0.8
336,714 + EX31_RS01495 0.26 +0.8
336,714 + EX31_RS01495 0.26 +1.1
336,734 + EX31_RS01495 0.27 +0.6
336,734 + EX31_RS01495 0.27 +1.0
336,734 + EX31_RS01495 0.27 -0.5
336,735 - EX31_RS01495 0.27 -0.4
336,735 - EX31_RS01495 0.27 -0.3
336,740 + EX31_RS01495 0.27 +0.5

Or see this region's nucleotide sequence