Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01305 and EX31_RS01310 are separated by 193 nucleotides EX31_RS01310 and EX31_RS01315 are separated by 31 nucleotides EX31_RS01315 and EX31_RS01320 are separated by 121 nucleotides
EX31_RS01305: EX31_RS01305 - trehalose-phosphatase, at 289,713 to 290,495
_RS01305
EX31_RS01310: EX31_RS01310 - DUF2493 domain-containing protein, at 290,689 to 291,054
_RS01310
EX31_RS01315: EX31_RS01315 - Na/Pi cotransporter family protein, at 291,086 to 292,759
_RS01315
EX31_RS01320: EX31_RS01320 - magnesium-translocating P-type ATPase, at 292,881 to 295,595
_RS01320
Position (kb)
291
292
293 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 290.440 kb on + strand at 290.530 kb on + strand at 290.530 kb on + strand at 290.531 kb on - strand at 290.584 kb on - strand at 290.584 kb on - strand at 290.584 kb on - strand at 290.584 kb on - strand at 290.584 kb on - strand at 290.587 kb on + strand at 290.587 kb on + strand at 290.587 kb on + strand at 290.588 kb on - strand at 290.588 kb on - strand at 290.588 kb on - strand at 290.588 kb on - strand at 290.588 kb on - strand at 290.588 kb on - strand at 290.590 kb on - strand at 290.590 kb on - strand at 290.590 kb on - strand at 290.823 kb on + strand, within EX31_RS01310 at 290.824 kb on - strand, within EX31_RS01310 at 290.840 kb on - strand, within EX31_RS01310 at 291.015 kb on + strand, within EX31_RS01310 at 291.016 kb on - strand, within EX31_RS01310 at 291.016 kb on - strand, within EX31_RS01310 at 291.016 kb on - strand, within EX31_RS01310 at 291.059 kb on + strand at 291.059 kb on + strand at 291.060 kb on - strand at 291.060 kb on - strand at 291.060 kb on - strand at 291.736 kb on - strand, within EX31_RS01315 at 291.736 kb on - strand, within EX31_RS01315 at 291.765 kb on + strand, within EX31_RS01315 at 291.765 kb on + strand, within EX31_RS01315 at 291.766 kb on - strand, within EX31_RS01315 at 291.766 kb on - strand, within EX31_RS01315 at 291.766 kb on - strand, within EX31_RS01315 at 291.766 kb on - strand, within EX31_RS01315 at 292.037 kb on + strand, within EX31_RS01315 at 292.037 kb on + strand, within EX31_RS01315 at 292.215 kb on - strand, within EX31_RS01315 at 292.238 kb on + strand, within EX31_RS01315 at 292.239 kb on - strand, within EX31_RS01315 at 292.239 kb on - strand, within EX31_RS01315 at 292.380 kb on - strand, within EX31_RS01315 at 292.484 kb on + strand, within EX31_RS01315 at 292.739 kb on + strand at 292.740 kb on - strand at 292.753 kb on + strand at 292.754 kb on - strand at 292.791 kb on + strand at 292.909 kb on + strand at 292.910 kb on - strand at 292.910 kb on - strand at 292.910 kb on - strand at 292.910 kb on - strand at 292.910 kb on - strand at 292.910 kb on - strand at 292.910 kb on - strand at 292.910 kb on - strand at 292.923 kb on - strand at 292.942 kb on + strand at 292.975 kb on + strand at 292.976 kb on - strand at 292.976 kb on - strand at 293.032 kb on + strand at 293.033 kb on - strand at 293.033 kb on - strand at 293.033 kb on - strand at 293.033 kb on - strand at 293.033 kb on - strand at 293.033 kb on - strand at 293.033 kb on - strand at 293.123 kb on + strand at 293.123 kb on + strand at 293.123 kb on + strand at 293.123 kb on + strand at 293.123 kb on + strand at 293.123 kb on + strand at 293.124 kb on - strand at 293.124 kb on - strand at 293.124 kb on - strand at 293.124 kb on - strand at 293.124 kb on - strand at 293.124 kb on - strand at 293.271 kb on + strand, within EX31_RS01320 at 293.272 kb on - strand, within EX31_RS01320 at 293.371 kb on + strand, within EX31_RS01320 at 293.371 kb on + strand, within EX31_RS01320 at 293.372 kb on - strand, within EX31_RS01320 at 293.372 kb on - strand, within EX31_RS01320 at 293.372 kb on - strand, within EX31_RS01320 at 293.372 kb on - strand, within EX31_RS01320 at 293.372 kb on - strand, within EX31_RS01320 at 293.372 kb on - strand, within EX31_RS01320 at 293.372 kb on - strand, within EX31_RS01320 at 293.372 kb on - strand, within EX31_RS01320 at 293.372 kb on - strand, within EX31_RS01320 at 293.372 kb on - strand, within EX31_RS01320 at 293.466 kb on - strand, within EX31_RS01320 at 293.488 kb on + strand, within EX31_RS01320 at 293.498 kb on + strand, within EX31_RS01320
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 290,440 + -0.2 290,530 + -0.1 290,530 + +1.3 290,531 - +0.2 290,584 - -1.9 290,584 - -0.9 290,584 - +1.3 290,584 - +1.1 290,584 - +1.3 290,587 + -0.3 290,587 + -1.7 290,587 + -0.3 290,588 - -0.6 290,588 - -0.6 290,588 - +1.8 290,588 - -0.5 290,588 - +1.0 290,588 - +1.6 290,590 - +1.8 290,590 - -0.2 290,590 - +0.8 290,823 + EX31_RS01310 0.37 -0.6 290,824 - EX31_RS01310 0.37 -0.6 290,840 - EX31_RS01310 0.41 -0.8 291,015 + EX31_RS01310 0.89 +0.5 291,016 - EX31_RS01310 0.89 +0.8 291,016 - EX31_RS01310 0.89 +1.2 291,016 - EX31_RS01310 0.89 +2.4 291,059 + +1.8 291,059 + +0.0 291,060 - -0.3 291,060 - +0.1 291,060 - +0.8 291,736 - EX31_RS01315 0.39 +0.4 291,736 - EX31_RS01315 0.39 +0.8 291,765 + EX31_RS01315 0.41 +0.7 291,765 + EX31_RS01315 0.41 -2.3 291,766 - EX31_RS01315 0.41 +0.8 291,766 - EX31_RS01315 0.41 -0.2 291,766 - EX31_RS01315 0.41 +0.8 291,766 - EX31_RS01315 0.41 +0.4 292,037 + EX31_RS01315 0.57 -1.2 292,037 + EX31_RS01315 0.57 +0.2 292,215 - EX31_RS01315 0.67 +1.5 292,238 + EX31_RS01315 0.69 +0.8 292,239 - EX31_RS01315 0.69 +1.8 292,239 - EX31_RS01315 0.69 +0.2 292,380 - EX31_RS01315 0.77 +2.5 292,484 + EX31_RS01315 0.84 +0.8 292,739 + +0.2 292,740 - +0.8 292,753 + +0.5 292,754 - +0.2 292,791 + -0.2 292,909 + +0.1 292,910 - +0.2 292,910 - -1.2 292,910 - +0.1 292,910 - +1.7 292,910 - +0.4 292,910 - +0.8 292,910 - +0.4 292,910 - +3.8 292,923 - -0.5 292,942 + -1.8 292,975 + +1.5 292,976 - -1.3 292,976 - -0.2 293,032 + -0.8 293,033 - -0.0 293,033 - +0.8 293,033 - +2.8 293,033 - +0.8 293,033 - +1.8 293,033 - +1.8 293,033 - -1.9 293,123 + +0.1 293,123 + -0.2 293,123 + -0.2 293,123 + +1.7 293,123 + +0.8 293,123 + -0.6 293,124 - -0.8 293,124 - +0.1 293,124 - +1.0 293,124 - +0.5 293,124 - +1.1 293,124 - +3.2 293,271 + EX31_RS01320 0.14 +1.4 293,272 - EX31_RS01320 0.14 -2.4 293,371 + EX31_RS01320 0.18 -0.0 293,371 + EX31_RS01320 0.18 +2.4 293,372 - EX31_RS01320 0.18 -1.5 293,372 - EX31_RS01320 0.18 +0.1 293,372 - EX31_RS01320 0.18 -0.2 293,372 - EX31_RS01320 0.18 +0.8 293,372 - EX31_RS01320 0.18 -1.3 293,372 - EX31_RS01320 0.18 -0.8 293,372 - EX31_RS01320 0.18 +1.1 293,372 - EX31_RS01320 0.18 -0.6 293,372 - EX31_RS01320 0.18 +0.4 293,372 - EX31_RS01320 0.18 +1.1 293,466 - EX31_RS01320 0.22 -1.5 293,488 + EX31_RS01320 0.22 +1.9 293,498 + EX31_RS01320 0.23 -1.5
Or see this region's nucleotide sequence