Strain Fitness in Rahnella sp. WP5 around EX31_RS01315

Experiment: casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS01305 and EX31_RS01310 are separated by 193 nucleotidesEX31_RS01310 and EX31_RS01315 are separated by 31 nucleotidesEX31_RS01315 and EX31_RS01320 are separated by 121 nucleotides EX31_RS01305: EX31_RS01305 - trehalose-phosphatase, at 289,713 to 290,495 _RS01305 EX31_RS01310: EX31_RS01310 - DUF2493 domain-containing protein, at 290,689 to 291,054 _RS01310 EX31_RS01315: EX31_RS01315 - Na/Pi cotransporter family protein, at 291,086 to 292,759 _RS01315 EX31_RS01320: EX31_RS01320 - magnesium-translocating P-type ATPase, at 292,881 to 295,595 _RS01320 Position (kb) 291 292 293Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 290.440 kb on + strandat 290.530 kb on + strandat 290.530 kb on + strandat 290.531 kb on - strandat 290.584 kb on - strandat 290.584 kb on - strandat 290.584 kb on - strandat 290.584 kb on - strandat 290.584 kb on - strandat 290.587 kb on + strandat 290.587 kb on + strandat 290.587 kb on + strandat 290.588 kb on - strandat 290.588 kb on - strandat 290.588 kb on - strandat 290.588 kb on - strandat 290.588 kb on - strandat 290.588 kb on - strandat 290.590 kb on - strandat 290.590 kb on - strandat 290.590 kb on - strandat 290.823 kb on + strand, within EX31_RS01310at 290.824 kb on - strand, within EX31_RS01310at 290.840 kb on - strand, within EX31_RS01310at 291.015 kb on + strand, within EX31_RS01310at 291.016 kb on - strand, within EX31_RS01310at 291.016 kb on - strand, within EX31_RS01310at 291.016 kb on - strand, within EX31_RS01310at 291.059 kb on + strandat 291.059 kb on + strandat 291.060 kb on - strandat 291.060 kb on - strandat 291.060 kb on - strandat 291.736 kb on - strand, within EX31_RS01315at 291.736 kb on - strand, within EX31_RS01315at 291.765 kb on + strand, within EX31_RS01315at 291.765 kb on + strand, within EX31_RS01315at 291.766 kb on - strand, within EX31_RS01315at 291.766 kb on - strand, within EX31_RS01315at 291.766 kb on - strand, within EX31_RS01315at 291.766 kb on - strand, within EX31_RS01315at 292.037 kb on + strand, within EX31_RS01315at 292.037 kb on + strand, within EX31_RS01315at 292.215 kb on - strand, within EX31_RS01315at 292.238 kb on + strand, within EX31_RS01315at 292.239 kb on - strand, within EX31_RS01315at 292.239 kb on - strand, within EX31_RS01315at 292.380 kb on - strand, within EX31_RS01315at 292.484 kb on + strand, within EX31_RS01315at 292.739 kb on + strandat 292.740 kb on - strandat 292.753 kb on + strandat 292.754 kb on - strandat 292.791 kb on + strandat 292.909 kb on + strandat 292.910 kb on - strandat 292.910 kb on - strandat 292.910 kb on - strandat 292.910 kb on - strandat 292.910 kb on - strandat 292.910 kb on - strandat 292.910 kb on - strandat 292.910 kb on - strandat 292.923 kb on - strandat 292.942 kb on + strandat 292.975 kb on + strandat 292.976 kb on - strandat 292.976 kb on - strandat 293.032 kb on + strandat 293.033 kb on - strandat 293.033 kb on - strandat 293.033 kb on - strandat 293.033 kb on - strandat 293.033 kb on - strandat 293.033 kb on - strandat 293.033 kb on - strandat 293.123 kb on + strandat 293.123 kb on + strandat 293.123 kb on + strandat 293.123 kb on + strandat 293.123 kb on + strandat 293.123 kb on + strandat 293.124 kb on - strandat 293.124 kb on - strandat 293.124 kb on - strandat 293.124 kb on - strandat 293.124 kb on - strandat 293.124 kb on - strandat 293.271 kb on + strand, within EX31_RS01320at 293.272 kb on - strand, within EX31_RS01320at 293.371 kb on + strand, within EX31_RS01320at 293.371 kb on + strand, within EX31_RS01320at 293.372 kb on - strand, within EX31_RS01320at 293.372 kb on - strand, within EX31_RS01320at 293.372 kb on - strand, within EX31_RS01320at 293.372 kb on - strand, within EX31_RS01320at 293.372 kb on - strand, within EX31_RS01320at 293.372 kb on - strand, within EX31_RS01320at 293.372 kb on - strand, within EX31_RS01320at 293.372 kb on - strand, within EX31_RS01320at 293.372 kb on - strand, within EX31_RS01320at 293.372 kb on - strand, within EX31_RS01320at 293.466 kb on - strand, within EX31_RS01320at 293.488 kb on + strand, within EX31_RS01320at 293.498 kb on + strand, within EX31_RS01320

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
remove
290,440 + -0.2
290,530 + -0.1
290,530 + +1.3
290,531 - +0.2
290,584 - -1.9
290,584 - -0.9
290,584 - +1.3
290,584 - +1.1
290,584 - +1.3
290,587 + -0.3
290,587 + -1.7
290,587 + -0.3
290,588 - -0.6
290,588 - -0.6
290,588 - +1.8
290,588 - -0.5
290,588 - +1.0
290,588 - +1.6
290,590 - +1.8
290,590 - -0.2
290,590 - +0.8
290,823 + EX31_RS01310 0.37 -0.6
290,824 - EX31_RS01310 0.37 -0.6
290,840 - EX31_RS01310 0.41 -0.8
291,015 + EX31_RS01310 0.89 +0.5
291,016 - EX31_RS01310 0.89 +0.8
291,016 - EX31_RS01310 0.89 +1.2
291,016 - EX31_RS01310 0.89 +2.4
291,059 + +1.8
291,059 + +0.0
291,060 - -0.3
291,060 - +0.1
291,060 - +0.8
291,736 - EX31_RS01315 0.39 +0.4
291,736 - EX31_RS01315 0.39 +0.8
291,765 + EX31_RS01315 0.41 +0.7
291,765 + EX31_RS01315 0.41 -2.3
291,766 - EX31_RS01315 0.41 +0.8
291,766 - EX31_RS01315 0.41 -0.2
291,766 - EX31_RS01315 0.41 +0.8
291,766 - EX31_RS01315 0.41 +0.4
292,037 + EX31_RS01315 0.57 -1.2
292,037 + EX31_RS01315 0.57 +0.2
292,215 - EX31_RS01315 0.67 +1.5
292,238 + EX31_RS01315 0.69 +0.8
292,239 - EX31_RS01315 0.69 +1.8
292,239 - EX31_RS01315 0.69 +0.2
292,380 - EX31_RS01315 0.77 +2.5
292,484 + EX31_RS01315 0.84 +0.8
292,739 + +0.2
292,740 - +0.8
292,753 + +0.5
292,754 - +0.2
292,791 + -0.2
292,909 + +0.1
292,910 - +0.2
292,910 - -1.2
292,910 - +0.1
292,910 - +1.7
292,910 - +0.4
292,910 - +0.8
292,910 - +0.4
292,910 - +3.8
292,923 - -0.5
292,942 + -1.8
292,975 + +1.5
292,976 - -1.3
292,976 - -0.2
293,032 + -0.8
293,033 - -0.0
293,033 - +0.8
293,033 - +2.8
293,033 - +0.8
293,033 - +1.8
293,033 - +1.8
293,033 - -1.9
293,123 + +0.1
293,123 + -0.2
293,123 + -0.2
293,123 + +1.7
293,123 + +0.8
293,123 + -0.6
293,124 - -0.8
293,124 - +0.1
293,124 - +1.0
293,124 - +0.5
293,124 - +1.1
293,124 - +3.2
293,271 + EX31_RS01320 0.14 +1.4
293,272 - EX31_RS01320 0.14 -2.4
293,371 + EX31_RS01320 0.18 -0.0
293,371 + EX31_RS01320 0.18 +2.4
293,372 - EX31_RS01320 0.18 -1.5
293,372 - EX31_RS01320 0.18 +0.1
293,372 - EX31_RS01320 0.18 -0.2
293,372 - EX31_RS01320 0.18 +0.8
293,372 - EX31_RS01320 0.18 -1.3
293,372 - EX31_RS01320 0.18 -0.8
293,372 - EX31_RS01320 0.18 +1.1
293,372 - EX31_RS01320 0.18 -0.6
293,372 - EX31_RS01320 0.18 +0.4
293,372 - EX31_RS01320 0.18 +1.1
293,466 - EX31_RS01320 0.22 -1.5
293,488 + EX31_RS01320 0.22 +1.9
293,498 + EX31_RS01320 0.23 -1.5

Or see this region's nucleotide sequence