Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01230 and EX31_RS01235 are separated by 44 nucleotides EX31_RS01235 and EX31_RS01240 are separated by 229 nucleotides
EX31_RS01230: EX31_RS01230 - arsenic transporter, at 273,319 to 274,608
_RS01230
EX31_RS01235: EX31_RS01235 - metalloregulator ArsR/SmtB family transcription factor, at 274,653 to 274,973
_RS01235
EX31_RS01240: EX31_RS01240 - glycoside hydrolase family 10 protein, at 275,203 to 276,588
_RS01240
Position (kb) 274
275 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 273.658 kb on + strand, within EX31_RS01230 at 273.658 kb on + strand, within EX31_RS01230 at 273.729 kb on - strand, within EX31_RS01230 at 273.740 kb on + strand, within EX31_RS01230 at 273.740 kb on + strand, within EX31_RS01230 at 273.740 kb on + strand, within EX31_RS01230 at 273.740 kb on + strand, within EX31_RS01230 at 273.741 kb on - strand, within EX31_RS01230 at 273.741 kb on - strand, within EX31_RS01230 at 273.741 kb on - strand, within EX31_RS01230 at 273.741 kb on - strand, within EX31_RS01230 at 273.801 kb on + strand, within EX31_RS01230 at 273.802 kb on - strand, within EX31_RS01230 at 273.828 kb on + strand, within EX31_RS01230 at 273.828 kb on + strand, within EX31_RS01230 at 273.829 kb on - strand, within EX31_RS01230 at 273.829 kb on - strand, within EX31_RS01230 at 273.829 kb on - strand, within EX31_RS01230 at 273.829 kb on - strand, within EX31_RS01230 at 273.830 kb on + strand, within EX31_RS01230 at 273.831 kb on - strand, within EX31_RS01230 at 273.831 kb on - strand, within EX31_RS01230 at 273.988 kb on - strand, within EX31_RS01230 at 273.992 kb on + strand, within EX31_RS01230 at 273.992 kb on + strand, within EX31_RS01230 at 274.125 kb on + strand, within EX31_RS01230 at 274.125 kb on + strand, within EX31_RS01230 at 274.199 kb on - strand, within EX31_RS01230 at 274.314 kb on + strand, within EX31_RS01230 at 274.314 kb on + strand, within EX31_RS01230 at 274.324 kb on - strand, within EX31_RS01230 at 274.324 kb on - strand, within EX31_RS01230 at 274.327 kb on + strand, within EX31_RS01230 at 274.328 kb on - strand, within EX31_RS01230 at 274.328 kb on - strand, within EX31_RS01230 at 274.414 kb on - strand, within EX31_RS01230 at 274.454 kb on - strand, within EX31_RS01230 at 274.454 kb on - strand, within EX31_RS01230 at 274.593 kb on + strand at 274.818 kb on + strand, within EX31_RS01235 at 274.819 kb on - strand, within EX31_RS01235 at 274.819 kb on - strand, within EX31_RS01235 at 274.819 kb on - strand, within EX31_RS01235 at 274.819 kb on - strand, within EX31_RS01235 at 274.819 kb on - strand, within EX31_RS01235 at 274.875 kb on - strand, within EX31_RS01235 at 274.974 kb on - strand at 274.974 kb on - strand at 275.063 kb on + strand at 275.171 kb on - strand at 275.250 kb on + strand at 275.327 kb on + strand at 275.484 kb on + strand, within EX31_RS01240 at 275.562 kb on + strand, within EX31_RS01240 at 275.562 kb on + strand, within EX31_RS01240 at 275.563 kb on - strand, within EX31_RS01240 at 275.580 kb on + strand, within EX31_RS01240 at 275.597 kb on + strand, within EX31_RS01240 at 275.597 kb on + strand, within EX31_RS01240 at 275.650 kb on - strand, within EX31_RS01240 at 275.700 kb on + strand, within EX31_RS01240 at 275.701 kb on - strand, within EX31_RS01240 at 275.748 kb on + strand, within EX31_RS01240 at 275.892 kb on + strand, within EX31_RS01240
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 273,658 + EX31_RS01230 0.26 +0.8 273,658 + EX31_RS01230 0.26 +0.4 273,729 - EX31_RS01230 0.32 +0.4 273,740 + EX31_RS01230 0.33 +0.6 273,740 + EX31_RS01230 0.33 -2.6 273,740 + EX31_RS01230 0.33 +1.1 273,740 + EX31_RS01230 0.33 +1.3 273,741 - EX31_RS01230 0.33 +0.5 273,741 - EX31_RS01230 0.33 -0.1 273,741 - EX31_RS01230 0.33 +1.2 273,741 - EX31_RS01230 0.33 +0.8 273,801 + EX31_RS01230 0.37 +1.8 273,802 - EX31_RS01230 0.37 -2.2 273,828 + EX31_RS01230 0.39 +0.1 273,828 + EX31_RS01230 0.39 +1.4 273,829 - EX31_RS01230 0.40 -0.2 273,829 - EX31_RS01230 0.40 -1.4 273,829 - EX31_RS01230 0.40 -0.6 273,829 - EX31_RS01230 0.40 +0.6 273,830 + EX31_RS01230 0.40 -1.5 273,831 - EX31_RS01230 0.40 +1.4 273,831 - EX31_RS01230 0.40 +1.1 273,988 - EX31_RS01230 0.52 +0.1 273,992 + EX31_RS01230 0.52 +2.0 273,992 + EX31_RS01230 0.52 +2.8 274,125 + EX31_RS01230 0.62 +1.6 274,125 + EX31_RS01230 0.62 -0.4 274,199 - EX31_RS01230 0.68 +1.5 274,314 + EX31_RS01230 0.77 +0.1 274,314 + EX31_RS01230 0.77 +0.3 274,324 - EX31_RS01230 0.78 -1.2 274,324 - EX31_RS01230 0.78 +2.7 274,327 + EX31_RS01230 0.78 +1.8 274,328 - EX31_RS01230 0.78 -1.3 274,328 - EX31_RS01230 0.78 -1.5 274,414 - EX31_RS01230 0.85 +0.6 274,454 - EX31_RS01230 0.88 -1.3 274,454 - EX31_RS01230 0.88 +0.1 274,593 + +1.8 274,818 + EX31_RS01235 0.51 -0.0 274,819 - EX31_RS01235 0.52 +2.4 274,819 - EX31_RS01235 0.52 -0.3 274,819 - EX31_RS01235 0.52 +1.4 274,819 - EX31_RS01235 0.52 -0.8 274,819 - EX31_RS01235 0.52 -0.9 274,875 - EX31_RS01235 0.69 -1.8 274,974 - +0.4 274,974 - -0.9 275,063 + -0.6 275,171 - +0.8 275,250 + +0.7 275,327 + -0.3 275,484 + EX31_RS01240 0.20 +0.5 275,562 + EX31_RS01240 0.26 -0.5 275,562 + EX31_RS01240 0.26 -0.2 275,563 - EX31_RS01240 0.26 +0.8 275,580 + EX31_RS01240 0.27 +1.7 275,597 + EX31_RS01240 0.28 +0.3 275,597 + EX31_RS01240 0.28 -0.7 275,650 - EX31_RS01240 0.32 -0.7 275,700 + EX31_RS01240 0.36 +1.3 275,701 - EX31_RS01240 0.36 -1.2 275,748 + EX31_RS01240 0.39 -0.5 275,892 + EX31_RS01240 0.50 -1.0
Or see this region's nucleotide sequence