Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01185 and EX31_RS01190 are separated by 239 nucleotides EX31_RS01190 and EX31_RS01195 are separated by 329 nucleotides
EX31_RS01185: EX31_RS01185 - two-component system sensor histidine kinase DcuS, at 262,287 to 263,906
_RS01185
EX31_RS01190: EX31_RS01190 - hypothetical protein, at 264,146 to 264,463
_RS01190
EX31_RS01195: EX31_RS01195 - SDR family oxidoreductase, at 264,793 to 265,698
_RS01195
Position (kb) 264
265 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 263.285 kb on + strand, within EX31_RS01185 at 263.286 kb on - strand, within EX31_RS01185 at 263.286 kb on - strand, within EX31_RS01185 at 263.312 kb on - strand, within EX31_RS01185 at 263.360 kb on + strand, within EX31_RS01185 at 263.376 kb on - strand, within EX31_RS01185 at 263.436 kb on - strand, within EX31_RS01185 at 263.450 kb on - strand, within EX31_RS01185 at 263.450 kb on - strand, within EX31_RS01185 at 263.450 kb on - strand, within EX31_RS01185 at 263.450 kb on - strand, within EX31_RS01185 at 263.486 kb on + strand, within EX31_RS01185 at 263.487 kb on - strand, within EX31_RS01185 at 263.487 kb on - strand, within EX31_RS01185 at 263.487 kb on - strand, within EX31_RS01185 at 263.615 kb on + strand, within EX31_RS01185 at 263.616 kb on - strand, within EX31_RS01185 at 263.663 kb on + strand, within EX31_RS01185 at 263.666 kb on + strand, within EX31_RS01185 at 263.666 kb on + strand, within EX31_RS01185 at 263.666 kb on + strand, within EX31_RS01185 at 263.666 kb on + strand, within EX31_RS01185 at 263.666 kb on + strand, within EX31_RS01185 at 263.666 kb on + strand, within EX31_RS01185 at 263.666 kb on + strand, within EX31_RS01185 at 263.667 kb on - strand, within EX31_RS01185 at 263.667 kb on - strand, within EX31_RS01185 at 263.667 kb on - strand, within EX31_RS01185 at 263.667 kb on - strand, within EX31_RS01185 at 263.667 kb on - strand, within EX31_RS01185 at 263.669 kb on + strand, within EX31_RS01185 at 263.669 kb on + strand, within EX31_RS01185 at 263.788 kb on + strand at 263.789 kb on - strand at 263.795 kb on + strand at 263.795 kb on + strand at 263.796 kb on - strand at 263.832 kb on + strand at 263.833 kb on - strand at 263.925 kb on - strand at 263.925 kb on - strand at 263.944 kb on + strand at 263.985 kb on - strand at 264.029 kb on + strand at 264.029 kb on + strand at 264.029 kb on + strand at 264.040 kb on + strand at 264.041 kb on - strand at 264.053 kb on + strand at 264.053 kb on + strand at 264.095 kb on - strand at 264.156 kb on + strand at 264.157 kb on - strand at 264.161 kb on - strand at 264.229 kb on - strand, within EX31_RS01190 at 264.229 kb on - strand, within EX31_RS01190 at 264.229 kb on - strand, within EX31_RS01190 at 264.337 kb on - strand, within EX31_RS01190 at 264.410 kb on + strand, within EX31_RS01190 at 264.411 kb on - strand, within EX31_RS01190 at 264.442 kb on + strand at 264.442 kb on + strand at 264.463 kb on + strand at 264.463 kb on + strand at 264.491 kb on - strand at 264.526 kb on + strand at 264.526 kb on + strand at 264.526 kb on + strand at 264.526 kb on + strand at 264.526 kb on + strand at 264.658 kb on + strand at 264.658 kb on + strand at 264.658 kb on + strand at 264.658 kb on + strand at 264.658 kb on + strand at 264.658 kb on + strand at 264.658 kb on + strand at 264.659 kb on - strand at 264.659 kb on - strand at 264.659 kb on - strand at 264.659 kb on - strand at 264.678 kb on + strand at 264.679 kb on - strand at 264.720 kb on + strand at 264.727 kb on + strand at 264.727 kb on + strand at 264.728 kb on - strand at 264.728 kb on - strand at 264.728 kb on - strand at 264.728 kb on - strand at 264.728 kb on - strand at 264.728 kb on - strand at 264.728 kb on - strand at 264.752 kb on - strand at 264.764 kb on + strand at 264.781 kb on + strand at 264.792 kb on + strand at 264.792 kb on + strand at 264.934 kb on + strand, within EX31_RS01195 at 265.297 kb on + strand, within EX31_RS01195 at 265.297 kb on + strand, within EX31_RS01195 at 265.298 kb on - strand, within EX31_RS01195 at 265.298 kb on - strand, within EX31_RS01195 at 265.360 kb on - strand, within EX31_RS01195 at 265.362 kb on + strand, within EX31_RS01195 at 265.363 kb on - strand, within EX31_RS01195 at 265.363 kb on - strand, within EX31_RS01195 at 265.363 kb on - strand, within EX31_RS01195 at 265.363 kb on - strand, within EX31_RS01195 at 265.363 kb on - strand, within EX31_RS01195 at 265.363 kb on - strand, within EX31_RS01195
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 263,285 + EX31_RS01185 0.62 +0.3 263,286 - EX31_RS01185 0.62 -0.6 263,286 - EX31_RS01185 0.62 +1.8 263,312 - EX31_RS01185 0.63 +0.3 263,360 + EX31_RS01185 0.66 +0.3 263,376 - EX31_RS01185 0.67 +2.7 263,436 - EX31_RS01185 0.71 +0.4 263,450 - EX31_RS01185 0.72 +0.8 263,450 - EX31_RS01185 0.72 +0.8 263,450 - EX31_RS01185 0.72 -0.3 263,450 - EX31_RS01185 0.72 -0.4 263,486 + EX31_RS01185 0.74 +0.8 263,487 - EX31_RS01185 0.74 +0.4 263,487 - EX31_RS01185 0.74 +0.3 263,487 - EX31_RS01185 0.74 -0.2 263,615 + EX31_RS01185 0.82 +0.8 263,616 - EX31_RS01185 0.82 -0.2 263,663 + EX31_RS01185 0.85 -1.0 263,666 + EX31_RS01185 0.85 -1.7 263,666 + EX31_RS01185 0.85 -0.2 263,666 + EX31_RS01185 0.85 -1.5 263,666 + EX31_RS01185 0.85 -1.0 263,666 + EX31_RS01185 0.85 -0.4 263,666 + EX31_RS01185 0.85 +0.1 263,666 + EX31_RS01185 0.85 +1.4 263,667 - EX31_RS01185 0.85 +0.8 263,667 - EX31_RS01185 0.85 +0.8 263,667 - EX31_RS01185 0.85 +3.0 263,667 - EX31_RS01185 0.85 -0.2 263,667 - EX31_RS01185 0.85 -1.2 263,669 + EX31_RS01185 0.85 -1.2 263,669 + EX31_RS01185 0.85 -0.3 263,788 + -3.1 263,789 - -1.0 263,795 + +0.7 263,795 + -1.2 263,796 - -0.5 263,832 + +0.5 263,833 - -0.7 263,925 - +1.1 263,925 - +1.0 263,944 + -0.7 263,985 - +0.5 264,029 + +0.5 264,029 + -0.7 264,029 + +0.8 264,040 + -1.0 264,041 - +0.8 264,053 + +0.8 264,053 + -1.2 264,095 - +2.2 264,156 + -0.2 264,157 - +1.2 264,161 - -0.7 264,229 - EX31_RS01190 0.26 +1.2 264,229 - EX31_RS01190 0.26 +0.8 264,229 - EX31_RS01190 0.26 +0.7 264,337 - EX31_RS01190 0.60 +0.8 264,410 + EX31_RS01190 0.83 +2.2 264,411 - EX31_RS01190 0.83 +1.8 264,442 + +0.4 264,442 + +0.8 264,463 + -0.9 264,463 + -1.0 264,491 - -0.7 264,526 + +0.5 264,526 + +0.4 264,526 + +1.8 264,526 + +0.3 264,526 + +0.6 264,658 + +1.3 264,658 + -0.5 264,658 + +0.2 264,658 + -0.5 264,658 + +0.2 264,658 + -1.5 264,658 + +0.1 264,659 - -2.2 264,659 - -1.2 264,659 - +0.8 264,659 - -1.2 264,678 + -1.7 264,679 - +0.0 264,720 + +0.1 264,727 + -0.5 264,727 + -0.3 264,728 - +0.1 264,728 - +1.2 264,728 - -0.4 264,728 - -0.6 264,728 - +0.3 264,728 - -1.2 264,728 - +1.0 264,752 - -0.7 264,764 + -0.6 264,781 + +0.0 264,792 + -0.3 264,792 + +1.2 264,934 + EX31_RS01195 0.16 -0.5 265,297 + EX31_RS01195 0.56 +0.6 265,297 + EX31_RS01195 0.56 +1.5 265,298 - EX31_RS01195 0.56 -0.3 265,298 - EX31_RS01195 0.56 -0.2 265,360 - EX31_RS01195 0.63 +0.0 265,362 + EX31_RS01195 0.63 +0.8 265,363 - EX31_RS01195 0.63 -0.4 265,363 - EX31_RS01195 0.63 -0.3 265,363 - EX31_RS01195 0.63 +1.4 265,363 - EX31_RS01195 0.63 +2.2 265,363 - EX31_RS01195 0.63 -0.2 265,363 - EX31_RS01195 0.63 +0.3
Or see this region's nucleotide sequence