Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS25895 and EX31_RS01145 are separated by 165 nucleotides EX31_RS01145 and EX31_RS01150 are separated by 46 nucleotides EX31_RS01150 and EX31_RS01155 are separated by 505 nucleotides
EX31_RS25895: EX31_RS25895 - DinI-like family protein, at 249,420 to 249,527
_RS25895
EX31_RS01145: EX31_RS01145 - DUF3750 domain-containing protein, at 249,693 to 250,466
_RS01145
EX31_RS01150: EX31_RS01150 - oxaloacetate-decarboxylating malate dehydrogenase, at 250,513 to 252,198
_RS01150
EX31_RS01155: EX31_RS01155 - AEC family transporter, at 252,704 to 253,648
_RS01155
Position (kb) 250
251
252
253 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 249.563 kb on + strand at 249.564 kb on - strand at 249.564 kb on - strand at 249.564 kb on - strand at 249.611 kb on + strand at 249.611 kb on + strand at 249.612 kb on - strand at 249.612 kb on - strand at 249.651 kb on + strand at 249.688 kb on - strand at 249.703 kb on + strand at 249.703 kb on + strand at 249.712 kb on + strand at 249.712 kb on + strand at 249.736 kb on + strand at 249.736 kb on + strand at 249.870 kb on - strand, within EX31_RS01145 at 249.882 kb on + strand, within EX31_RS01145 at 249.882 kb on + strand, within EX31_RS01145 at 249.939 kb on + strand, within EX31_RS01145 at 250.003 kb on + strand, within EX31_RS01145 at 250.003 kb on + strand, within EX31_RS01145 at 250.003 kb on + strand, within EX31_RS01145 at 250.003 kb on + strand, within EX31_RS01145 at 250.004 kb on - strand, within EX31_RS01145 at 250.004 kb on - strand, within EX31_RS01145 at 250.006 kb on + strand, within EX31_RS01145 at 250.006 kb on + strand, within EX31_RS01145 at 250.006 kb on + strand, within EX31_RS01145 at 250.017 kb on + strand, within EX31_RS01145 at 250.058 kb on + strand, within EX31_RS01145 at 250.058 kb on + strand, within EX31_RS01145 at 250.060 kb on + strand, within EX31_RS01145 at 250.061 kb on - strand, within EX31_RS01145 at 250.094 kb on + strand, within EX31_RS01145 at 250.095 kb on - strand, within EX31_RS01145 at 250.095 kb on - strand, within EX31_RS01145 at 250.143 kb on - strand, within EX31_RS01145 at 250.143 kb on - strand, within EX31_RS01145 at 250.146 kb on + strand, within EX31_RS01145 at 250.146 kb on + strand, within EX31_RS01145 at 250.147 kb on - strand, within EX31_RS01145 at 250.147 kb on - strand, within EX31_RS01145 at 250.147 kb on - strand, within EX31_RS01145 at 250.147 kb on - strand, within EX31_RS01145 at 250.175 kb on + strand, within EX31_RS01145 at 250.175 kb on + strand, within EX31_RS01145 at 250.176 kb on - strand, within EX31_RS01145 at 250.176 kb on - strand, within EX31_RS01145 at 250.176 kb on - strand, within EX31_RS01145 at 250.442 kb on + strand at 250.530 kb on + strand at 250.530 kb on + strand at 250.533 kb on - strand at 250.817 kb on + strand, within EX31_RS01150 at 250.817 kb on + strand, within EX31_RS01150 at 250.817 kb on + strand, within EX31_RS01150 at 250.828 kb on - strand, within EX31_RS01150 at 250.828 kb on - strand, within EX31_RS01150 at 251.451 kb on + strand, within EX31_RS01150 at 251.451 kb on + strand, within EX31_RS01150 at 251.452 kb on - strand, within EX31_RS01150 at 251.452 kb on - strand, within EX31_RS01150 at 251.452 kb on - strand, within EX31_RS01150 at 251.527 kb on - strand, within EX31_RS01150 at 251.527 kb on - strand, within EX31_RS01150 at 251.527 kb on - strand, within EX31_RS01150 at 251.527 kb on - strand, within EX31_RS01150 at 251.543 kb on + strand, within EX31_RS01150 at 251.675 kb on + strand, within EX31_RS01150 at 251.675 kb on + strand, within EX31_RS01150 at 251.676 kb on - strand, within EX31_RS01150 at 251.809 kb on - strand, within EX31_RS01150 at 251.855 kb on + strand, within EX31_RS01150 at 251.856 kb on - strand, within EX31_RS01150 at 251.856 kb on - strand, within EX31_RS01150 at 251.857 kb on + strand, within EX31_RS01150 at 251.857 kb on + strand, within EX31_RS01150 at 251.857 kb on + strand, within EX31_RS01150 at 251.857 kb on + strand, within EX31_RS01150 at 251.858 kb on - strand, within EX31_RS01150 at 251.900 kb on + strand, within EX31_RS01150 at 251.901 kb on - strand, within EX31_RS01150 at 252.054 kb on + strand at 252.055 kb on - strand at 252.154 kb on + strand at 252.177 kb on - strand at 252.203 kb on - strand at 252.843 kb on + strand, within EX31_RS01155 at 252.844 kb on - strand, within EX31_RS01155 at 252.864 kb on + strand, within EX31_RS01155 at 252.864 kb on + strand, within EX31_RS01155 at 252.864 kb on + strand, within EX31_RS01155 at 252.864 kb on + strand, within EX31_RS01155 at 252.864 kb on + strand, within EX31_RS01155 at 252.864 kb on + strand, within EX31_RS01155 at 252.865 kb on - strand, within EX31_RS01155 at 252.868 kb on + strand, within EX31_RS01155 at 252.868 kb on + strand, within EX31_RS01155 at 252.868 kb on + strand, within EX31_RS01155 at 252.935 kb on + strand, within EX31_RS01155 at 252.935 kb on + strand, within EX31_RS01155 at 253.102 kb on + strand, within EX31_RS01155 at 253.102 kb on + strand, within EX31_RS01155
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 249,563 + -0.6 249,564 - -0.7 249,564 - +0.5 249,564 - +0.9 249,611 + +0.2 249,611 + -2.1 249,612 - +1.3 249,612 - -0.9 249,651 + +2.2 249,688 - -0.9 249,703 + +0.5 249,703 + -0.7 249,712 + +1.1 249,712 + +0.0 249,736 + +1.3 249,736 + -0.9 249,870 - EX31_RS01145 0.23 -1.2 249,882 + EX31_RS01145 0.24 -0.2 249,882 + EX31_RS01145 0.24 +0.2 249,939 + EX31_RS01145 0.32 -0.7 250,003 + EX31_RS01145 0.40 +0.0 250,003 + EX31_RS01145 0.40 -0.7 250,003 + EX31_RS01145 0.40 -2.3 250,003 + EX31_RS01145 0.40 +0.8 250,004 - EX31_RS01145 0.40 +0.4 250,004 - EX31_RS01145 0.40 +1.5 250,006 + EX31_RS01145 0.40 +1.5 250,006 + EX31_RS01145 0.40 -1.5 250,006 + EX31_RS01145 0.40 -2.7 250,017 + EX31_RS01145 0.42 -0.7 250,058 + EX31_RS01145 0.47 -0.3 250,058 + EX31_RS01145 0.47 +1.8 250,060 + EX31_RS01145 0.47 +0.8 250,061 - EX31_RS01145 0.48 -0.9 250,094 + EX31_RS01145 0.52 -0.2 250,095 - EX31_RS01145 0.52 +0.8 250,095 - EX31_RS01145 0.52 -0.7 250,143 - EX31_RS01145 0.58 -0.2 250,143 - EX31_RS01145 0.58 -0.8 250,146 + EX31_RS01145 0.59 +0.8 250,146 + EX31_RS01145 0.59 -2.9 250,147 - EX31_RS01145 0.59 -0.6 250,147 - EX31_RS01145 0.59 +0.8 250,147 - EX31_RS01145 0.59 +0.2 250,147 - EX31_RS01145 0.59 +0.6 250,175 + EX31_RS01145 0.62 -0.4 250,175 + EX31_RS01145 0.62 -1.0 250,176 - EX31_RS01145 0.62 -0.5 250,176 - EX31_RS01145 0.62 +0.0 250,176 - EX31_RS01145 0.62 +1.7 250,442 + +2.4 250,530 + +2.4 250,530 + +2.7 250,533 - -0.8 250,817 + EX31_RS01150 0.18 +1.0 250,817 + EX31_RS01150 0.18 +1.6 250,817 + EX31_RS01150 0.18 -1.9 250,828 - EX31_RS01150 0.19 +1.8 250,828 - EX31_RS01150 0.19 -0.3 251,451 + EX31_RS01150 0.56 +1.1 251,451 + EX31_RS01150 0.56 +0.8 251,452 - EX31_RS01150 0.56 +1.0 251,452 - EX31_RS01150 0.56 +0.2 251,452 - EX31_RS01150 0.56 +1.1 251,527 - EX31_RS01150 0.60 +0.6 251,527 - EX31_RS01150 0.60 +1.4 251,527 - EX31_RS01150 0.60 +1.8 251,527 - EX31_RS01150 0.60 -0.7 251,543 + EX31_RS01150 0.61 +0.5 251,675 + EX31_RS01150 0.69 -0.3 251,675 + EX31_RS01150 0.69 +1.4 251,676 - EX31_RS01150 0.69 -0.2 251,809 - EX31_RS01150 0.77 -0.8 251,855 + EX31_RS01150 0.80 -0.2 251,856 - EX31_RS01150 0.80 +0.3 251,856 - EX31_RS01150 0.80 -1.5 251,857 + EX31_RS01150 0.80 -0.2 251,857 + EX31_RS01150 0.80 +0.6 251,857 + EX31_RS01150 0.80 +0.5 251,857 + EX31_RS01150 0.80 -0.2 251,858 - EX31_RS01150 0.80 +0.8 251,900 + EX31_RS01150 0.82 +0.3 251,901 - EX31_RS01150 0.82 +2.2 252,054 + +0.3 252,055 - -0.2 252,154 + +0.0 252,177 - +1.6 252,203 - +0.4 252,843 + EX31_RS01155 0.15 +0.3 252,844 - EX31_RS01155 0.15 +1.4 252,864 + EX31_RS01155 0.17 -1.0 252,864 + EX31_RS01155 0.17 +1.1 252,864 + EX31_RS01155 0.17 +0.5 252,864 + EX31_RS01155 0.17 +0.8 252,864 + EX31_RS01155 0.17 -0.7 252,864 + EX31_RS01155 0.17 +0.1 252,865 - EX31_RS01155 0.17 +1.4 252,868 + EX31_RS01155 0.17 -0.3 252,868 + EX31_RS01155 0.17 -0.2 252,868 + EX31_RS01155 0.17 -0.4 252,935 + EX31_RS01155 0.24 -0.2 252,935 + EX31_RS01155 0.24 +0.8 253,102 + EX31_RS01155 0.42 -0.1 253,102 + EX31_RS01155 0.42 -1.0
Or see this region's nucleotide sequence