Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00900 and EX31_RS00905 are separated by 46 nucleotides EX31_RS00905 and EX31_RS00910 are separated by 118 nucleotides
EX31_RS00900: EX31_RS00900 - mechanosensitive ion channel, at 196,087 to 197,709
_RS00900
EX31_RS00905: EX31_RS00905 - ester cyclase, at 197,756 to 198,202
_RS00905
EX31_RS00910: EX31_RS00910 - LysR family transcriptional regulator, at 198,321 to 199,235
_RS00910
Position (kb) 197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 196.788 kb on + strand, within EX31_RS00900 at 196.788 kb on + strand, within EX31_RS00900 at 196.789 kb on - strand, within EX31_RS00900 at 196.820 kb on + strand, within EX31_RS00900 at 196.900 kb on - strand, within EX31_RS00900 at 196.929 kb on - strand, within EX31_RS00900 at 196.934 kb on + strand, within EX31_RS00900 at 196.934 kb on + strand, within EX31_RS00900 at 197.096 kb on + strand, within EX31_RS00900 at 197.170 kb on + strand, within EX31_RS00900 at 197.497 kb on + strand, within EX31_RS00900 at 197.497 kb on + strand, within EX31_RS00900 at 197.498 kb on - strand, within EX31_RS00900 at 197.506 kb on + strand, within EX31_RS00900 at 197.585 kb on + strand at 197.586 kb on - strand at 197.586 kb on - strand at 197.586 kb on - strand at 197.586 kb on - strand at 197.586 kb on - strand at 197.599 kb on - strand at 197.599 kb on - strand at 197.664 kb on + strand at 197.715 kb on - strand at 197.739 kb on + strand at 198.070 kb on + strand, within EX31_RS00905 at 198.105 kb on - strand, within EX31_RS00905 at 198.154 kb on + strand, within EX31_RS00905 at 198.154 kb on + strand, within EX31_RS00905 at 198.154 kb on + strand, within EX31_RS00905 at 198.154 kb on + strand, within EX31_RS00905 at 198.155 kb on - strand, within EX31_RS00905 at 198.155 kb on - strand, within EX31_RS00905 at 198.155 kb on - strand, within EX31_RS00905 at 198.240 kb on + strand at 198.241 kb on - strand at 198.261 kb on + strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.272 kb on + strand at 198.272 kb on + strand at 198.281 kb on + strand at 198.304 kb on - strand at 198.304 kb on - strand at 198.313 kb on + strand at 198.313 kb on + strand at 198.313 kb on + strand at 198.314 kb on - strand at 198.314 kb on - strand at 198.321 kb on - strand at 198.330 kb on - strand at 198.507 kb on - strand, within EX31_RS00910 at 198.618 kb on - strand, within EX31_RS00910 at 198.665 kb on + strand, within EX31_RS00910 at 198.889 kb on + strand, within EX31_RS00910 at 198.897 kb on + strand, within EX31_RS00910 at 198.914 kb on + strand, within EX31_RS00910 at 198.942 kb on + strand, within EX31_RS00910 at 199.047 kb on + strand, within EX31_RS00910 at 199.078 kb on + strand, within EX31_RS00910
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 196,788 + EX31_RS00900 0.43 +4.2 196,788 + EX31_RS00900 0.43 +0.3 196,789 - EX31_RS00900 0.43 -2.9 196,820 + EX31_RS00900 0.45 +0.6 196,900 - EX31_RS00900 0.50 +2.2 196,929 - EX31_RS00900 0.52 +0.3 196,934 + EX31_RS00900 0.52 +0.7 196,934 + EX31_RS00900 0.52 -0.4 197,096 + EX31_RS00900 0.62 +1.9 197,170 + EX31_RS00900 0.67 +0.1 197,497 + EX31_RS00900 0.87 +1.4 197,497 + EX31_RS00900 0.87 -0.1 197,498 - EX31_RS00900 0.87 +0.3 197,506 + EX31_RS00900 0.87 -0.5 197,585 + +0.6 197,586 - -1.9 197,586 - +0.4 197,586 - +0.0 197,586 - -1.3 197,586 - -0.6 197,599 - +1.0 197,599 - -1.3 197,664 + +0.9 197,715 - +1.3 197,739 + -0.9 198,070 + EX31_RS00905 0.70 +1.9 198,105 - EX31_RS00905 0.78 +0.7 198,154 + EX31_RS00905 0.89 -1.1 198,154 + EX31_RS00905 0.89 +1.8 198,154 + EX31_RS00905 0.89 +0.9 198,154 + EX31_RS00905 0.89 +1.1 198,155 - EX31_RS00905 0.89 -1.0 198,155 - EX31_RS00905 0.89 +1.3 198,155 - EX31_RS00905 0.89 -0.9 198,240 + -0.1 198,241 - +0.4 198,261 + -1.7 198,262 - +0.0 198,262 - -0.1 198,272 + -1.5 198,272 + +1.3 198,281 + +0.6 198,304 - +0.3 198,304 - -3.0 198,313 + -0.1 198,313 + +1.2 198,313 + -0.1 198,314 - +0.9 198,314 - +0.3 198,321 - -1.1 198,330 - -0.1 198,507 - EX31_RS00910 0.20 -0.6 198,618 - EX31_RS00910 0.32 +0.5 198,665 + EX31_RS00910 0.38 +0.8 198,889 + EX31_RS00910 0.62 -1.1 198,897 + EX31_RS00910 0.63 +0.9 198,914 + EX31_RS00910 0.65 -0.5 198,942 + EX31_RS00910 0.68 +3.4 199,047 + EX31_RS00910 0.79 +1.6 199,078 + EX31_RS00910 0.83 +1.9
Or see this region's nucleotide sequence