Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00445 and EX31_RS00450 are separated by 211 nucleotides EX31_RS00450 and EX31_RS00455 are separated by 95 nucleotides
EX31_RS00445: EX31_RS00445 - outer membrane protein assembly factor BamA, at 95,727 to 98,150
_RS00445
EX31_RS00450: EX31_RS00450 - methionine-R-sulfoxide reductase, at 98,362 to 98,748
_RS00450
EX31_RS00455: EX31_RS00455 - efflux transporter outer membrane subunit, at 98,844 to 100,214
_RS00455
Position (kb) 98
99 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 97.470 kb on + strand, within EX31_RS00445 at 97.470 kb on + strand, within EX31_RS00445 at 97.471 kb on - strand, within EX31_RS00445 at 97.473 kb on - strand, within EX31_RS00445 at 97.560 kb on + strand, within EX31_RS00445 at 97.560 kb on + strand, within EX31_RS00445 at 97.560 kb on + strand, within EX31_RS00445 at 97.564 kb on - strand, within EX31_RS00445 at 97.591 kb on - strand, within EX31_RS00445 at 97.683 kb on + strand, within EX31_RS00445 at 97.683 kb on + strand, within EX31_RS00445 at 97.696 kb on - strand, within EX31_RS00445 at 97.759 kb on - strand, within EX31_RS00445 at 97.788 kb on + strand, within EX31_RS00445 at 97.788 kb on + strand, within EX31_RS00445 at 97.789 kb on - strand, within EX31_RS00445 at 97.863 kb on + strand, within EX31_RS00445 at 97.863 kb on + strand, within EX31_RS00445 at 97.864 kb on - strand, within EX31_RS00445 at 97.864 kb on - strand, within EX31_RS00445 at 97.894 kb on - strand, within EX31_RS00445 at 97.910 kb on + strand at 98.012 kb on + strand at 98.012 kb on + strand at 98.012 kb on + strand at 98.012 kb on + strand at 98.013 kb on - strand at 98.013 kb on - strand at 98.013 kb on - strand at 98.013 kb on - strand at 98.174 kb on - strand at 98.225 kb on - strand at 98.277 kb on + strand at 98.277 kb on + strand at 98.279 kb on + strand at 98.303 kb on + strand at 98.355 kb on + strand at 98.379 kb on - strand at 98.456 kb on + strand, within EX31_RS00450 at 98.616 kb on - strand, within EX31_RS00450 at 98.670 kb on + strand, within EX31_RS00450 at 98.671 kb on - strand, within EX31_RS00450 at 98.672 kb on + strand, within EX31_RS00450 at 98.673 kb on - strand, within EX31_RS00450 at 98.782 kb on + strand at 98.782 kb on + strand at 98.784 kb on + strand at 98.784 kb on + strand at 98.784 kb on + strand at 98.785 kb on - strand at 98.785 kb on - strand at 98.785 kb on - strand at 98.789 kb on + strand at 98.790 kb on - strand at 98.795 kb on + strand at 98.795 kb on + strand at 98.796 kb on - strand at 98.796 kb on - strand at 98.796 kb on - strand at 98.796 kb on - strand at 98.796 kb on - strand at 98.796 kb on - strand at 98.810 kb on + strand at 98.838 kb on - strand at 98.838 kb on - strand at 98.845 kb on + strand at 98.989 kb on + strand, within EX31_RS00455 at 99.034 kb on + strand, within EX31_RS00455 at 99.034 kb on + strand, within EX31_RS00455 at 99.034 kb on + strand, within EX31_RS00455 at 99.034 kb on + strand, within EX31_RS00455 at 99.034 kb on + strand, within EX31_RS00455 at 99.035 kb on - strand, within EX31_RS00455 at 99.035 kb on - strand, within EX31_RS00455 at 99.035 kb on - strand, within EX31_RS00455 at 99.035 kb on - strand, within EX31_RS00455 at 99.035 kb on - strand, within EX31_RS00455 at 99.035 kb on - strand, within EX31_RS00455 at 99.035 kb on - strand, within EX31_RS00455 at 99.035 kb on - strand, within EX31_RS00455 at 99.035 kb on - strand, within EX31_RS00455 at 99.101 kb on + strand, within EX31_RS00455 at 99.102 kb on - strand, within EX31_RS00455 at 99.183 kb on - strand, within EX31_RS00455 at 99.360 kb on - strand, within EX31_RS00455 at 99.397 kb on - strand, within EX31_RS00455 at 99.539 kb on - strand, within EX31_RS00455 at 99.633 kb on - strand, within EX31_RS00455
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 97,470 + EX31_RS00445 0.72 +0.9 97,470 + EX31_RS00445 0.72 +3.2 97,471 - EX31_RS00445 0.72 +0.5 97,473 - EX31_RS00445 0.72 -0.3 97,560 + EX31_RS00445 0.76 +0.1 97,560 + EX31_RS00445 0.76 +0.4 97,560 + EX31_RS00445 0.76 -0.8 97,564 - EX31_RS00445 0.76 -0.7 97,591 - EX31_RS00445 0.77 -1.7 97,683 + EX31_RS00445 0.81 -0.3 97,683 + EX31_RS00445 0.81 +0.2 97,696 - EX31_RS00445 0.81 +0.9 97,759 - EX31_RS00445 0.84 +0.9 97,788 + EX31_RS00445 0.85 -0.5 97,788 + EX31_RS00445 0.85 +0.9 97,789 - EX31_RS00445 0.85 +1.2 97,863 + EX31_RS00445 0.88 +0.5 97,863 + EX31_RS00445 0.88 +0.9 97,864 - EX31_RS00445 0.88 +0.7 97,864 - EX31_RS00445 0.88 -1.0 97,894 - EX31_RS00445 0.89 +1.9 97,910 + +1.2 98,012 + +1.9 98,012 + -1.4 98,012 + +0.3 98,012 + -1.4 98,013 - +0.2 98,013 - +0.8 98,013 - +2.2 98,013 - +0.9 98,174 - +0.9 98,225 - +0.7 98,277 + +1.5 98,277 + -1.5 98,279 + -0.1 98,303 + -0.9 98,355 + -0.7 98,379 - -0.1 98,456 + EX31_RS00450 0.24 +0.1 98,616 - EX31_RS00450 0.66 +1.5 98,670 + EX31_RS00450 0.80 -1.9 98,671 - EX31_RS00450 0.80 -0.7 98,672 + EX31_RS00450 0.80 -1.8 98,673 - EX31_RS00450 0.80 +0.3 98,782 + +0.6 98,782 + -1.0 98,784 + -0.1 98,784 + +0.3 98,784 + +1.7 98,785 - +1.1 98,785 - +1.6 98,785 - +0.4 98,789 + +1.9 98,790 - -1.1 98,795 + -0.5 98,795 + +0.5 98,796 - +1.3 98,796 - -1.0 98,796 - +1.9 98,796 - +0.9 98,796 - +1.5 98,796 - +1.2 98,810 + -0.1 98,838 - +0.3 98,838 - +0.0 98,845 + -0.7 98,989 + EX31_RS00455 0.11 -1.7 99,034 + EX31_RS00455 0.14 -1.0 99,034 + EX31_RS00455 0.14 -0.3 99,034 + EX31_RS00455 0.14 -1.1 99,034 + EX31_RS00455 0.14 +0.3 99,034 + EX31_RS00455 0.14 -0.2 99,035 - EX31_RS00455 0.14 -0.7 99,035 - EX31_RS00455 0.14 +0.9 99,035 - EX31_RS00455 0.14 -0.6 99,035 - EX31_RS00455 0.14 -1.8 99,035 - EX31_RS00455 0.14 +0.5 99,035 - EX31_RS00455 0.14 -0.4 99,035 - EX31_RS00455 0.14 +1.0 99,035 - EX31_RS00455 0.14 +1.2 99,035 - EX31_RS00455 0.14 +1.5 99,101 + EX31_RS00455 0.19 -1.8 99,102 - EX31_RS00455 0.19 -0.7 99,183 - EX31_RS00455 0.25 -0.2 99,360 - EX31_RS00455 0.38 -1.1 99,397 - EX31_RS00455 0.40 -0.7 99,539 - EX31_RS00455 0.51 -0.6 99,633 - EX31_RS00455 0.58 -0.7
Or see this region's nucleotide sequence