Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00405 and EX31_RS00410 are separated by 4 nucleotides EX31_RS00410 and EX31_RS00415 overlap by 1 nucleotides EX31_RS00415 and EX31_RS00420 are separated by 257 nucleotides
EX31_RS00405: EX31_RS00405 - MFS transporter, at 85,697 to 86,935
_RS00405
EX31_RS00410: EX31_RS00410 - ABC transporter ATP-binding protein, at 86,940 to 87,755
_RS00410
EX31_RS00415: EX31_RS00415 - ABC transporter ATP-binding protein, at 87,755 to 88,573
_RS00415
EX31_RS00420: EX31_RS00420 - LacI family DNA-binding transcriptional regulator, at 88,831 to 89,886
_RS00420
Position (kb) 87
88
89 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 86.808 kb on - strand, within EX31_RS00405 at 86.808 kb on - strand, within EX31_RS00405 at 86.863 kb on + strand at 86.863 kb on + strand at 86.863 kb on + strand at 86.864 kb on - strand at 86.864 kb on - strand at 86.868 kb on - strand at 86.961 kb on + strand at 86.962 kb on - strand at 86.962 kb on - strand at 86.962 kb on - strand at 86.993 kb on + strand at 86.999 kb on + strand at 87.021 kb on - strand at 87.021 kb on - strand at 87.021 kb on - strand at 87.082 kb on - strand, within EX31_RS00410 at 87.102 kb on - strand, within EX31_RS00410 at 87.102 kb on - strand, within EX31_RS00410 at 87.293 kb on + strand, within EX31_RS00410 at 87.451 kb on + strand, within EX31_RS00410 at 87.452 kb on - strand, within EX31_RS00410 at 87.452 kb on - strand, within EX31_RS00410 at 87.521 kb on - strand, within EX31_RS00410 at 87.522 kb on + strand, within EX31_RS00410 at 87.522 kb on + strand, within EX31_RS00410 at 87.522 kb on + strand, within EX31_RS00410 at 87.522 kb on + strand, within EX31_RS00410 at 87.522 kb on + strand, within EX31_RS00410 at 87.522 kb on + strand, within EX31_RS00410 at 87.522 kb on + strand, within EX31_RS00410 at 87.523 kb on - strand, within EX31_RS00410 at 87.523 kb on - strand, within EX31_RS00410 at 87.523 kb on - strand, within EX31_RS00410 at 87.523 kb on - strand, within EX31_RS00410 at 87.523 kb on - strand, within EX31_RS00410 at 87.523 kb on - strand, within EX31_RS00410 at 87.523 kb on - strand, within EX31_RS00410 at 87.523 kb on - strand, within EX31_RS00410 at 87.523 kb on - strand, within EX31_RS00410 at 87.523 kb on - strand, within EX31_RS00410 at 87.837 kb on + strand, within EX31_RS00415 at 87.838 kb on - strand, within EX31_RS00415 at 87.860 kb on + strand, within EX31_RS00415 at 87.860 kb on + strand, within EX31_RS00415 at 87.861 kb on - strand, within EX31_RS00415 at 87.924 kb on - strand, within EX31_RS00415 at 87.944 kb on - strand, within EX31_RS00415 at 87.944 kb on - strand, within EX31_RS00415 at 87.997 kb on + strand, within EX31_RS00415 at 87.998 kb on - strand, within EX31_RS00415 at 88.232 kb on + strand, within EX31_RS00415 at 88.233 kb on - strand, within EX31_RS00415 at 88.349 kb on - strand, within EX31_RS00415 at 88.550 kb on - strand at 88.670 kb on + strand at 88.670 kb on + strand at 88.670 kb on + strand at 88.671 kb on - strand at 88.671 kb on - strand at 88.671 kb on - strand at 88.792 kb on + strand at 88.792 kb on + strand at 88.793 kb on - strand at 88.828 kb on + strand at 88.829 kb on - strand at 88.832 kb on + strand at 89.010 kb on - strand, within EX31_RS00420 at 89.010 kb on - strand, within EX31_RS00420 at 89.010 kb on - strand, within EX31_RS00420 at 89.010 kb on - strand, within EX31_RS00420 at 89.068 kb on - strand, within EX31_RS00420 at 89.068 kb on - strand, within EX31_RS00420 at 89.068 kb on - strand, within EX31_RS00420 at 89.068 kb on - strand, within EX31_RS00420 at 89.181 kb on - strand, within EX31_RS00420 at 89.181 kb on - strand, within EX31_RS00420 at 89.181 kb on - strand, within EX31_RS00420 at 89.293 kb on - strand, within EX31_RS00420 at 89.293 kb on - strand, within EX31_RS00420 at 89.293 kb on - strand, within EX31_RS00420 at 89.297 kb on + strand, within EX31_RS00420 at 89.298 kb on - strand, within EX31_RS00420 at 89.298 kb on - strand, within EX31_RS00420 at 89.374 kb on - strand, within EX31_RS00420 at 89.374 kb on - strand, within EX31_RS00420 at 89.394 kb on + strand, within EX31_RS00420 at 89.395 kb on - strand, within EX31_RS00420 at 89.395 kb on - strand, within EX31_RS00420 at 89.395 kb on - strand, within EX31_RS00420 at 89.441 kb on + strand, within EX31_RS00420 at 89.442 kb on - strand, within EX31_RS00420 at 89.545 kb on - strand, within EX31_RS00420 at 89.545 kb on - strand, within EX31_RS00420
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 86,808 - EX31_RS00405 0.90 +0.6 86,808 - EX31_RS00405 0.90 -0.7 86,863 + +0.6 86,863 + +0.6 86,863 + +0.3 86,864 - -1.1 86,864 - +2.1 86,868 - -0.4 86,961 + +1.5 86,962 - +0.9 86,962 - -0.2 86,962 - -0.2 86,993 + -0.3 86,999 + -1.9 87,021 - +0.3 87,021 - -0.7 87,021 - +0.9 87,082 - EX31_RS00410 0.17 +1.1 87,102 - EX31_RS00410 0.20 -0.0 87,102 - EX31_RS00410 0.20 -3.4 87,293 + EX31_RS00410 0.43 -1.1 87,451 + EX31_RS00410 0.63 -0.2 87,452 - EX31_RS00410 0.63 -0.3 87,452 - EX31_RS00410 0.63 -0.5 87,521 - EX31_RS00410 0.71 -0.7 87,522 + EX31_RS00410 0.71 +0.7 87,522 + EX31_RS00410 0.71 -0.1 87,522 + EX31_RS00410 0.71 -2.3 87,522 + EX31_RS00410 0.71 -1.3 87,522 + EX31_RS00410 0.71 +0.4 87,522 + EX31_RS00410 0.71 +2.2 87,522 + EX31_RS00410 0.71 +0.3 87,523 - EX31_RS00410 0.71 +1.2 87,523 - EX31_RS00410 0.71 -2.1 87,523 - EX31_RS00410 0.71 +1.3 87,523 - EX31_RS00410 0.71 +0.2 87,523 - EX31_RS00410 0.71 +0.1 87,523 - EX31_RS00410 0.71 -1.9 87,523 - EX31_RS00410 0.71 -0.1 87,523 - EX31_RS00410 0.71 -1.6 87,523 - EX31_RS00410 0.71 +0.6 87,523 - EX31_RS00410 0.71 -0.7 87,837 + EX31_RS00415 0.10 -0.4 87,838 - EX31_RS00415 0.10 +1.2 87,860 + EX31_RS00415 0.13 -0.3 87,860 + EX31_RS00415 0.13 -1.9 87,861 - EX31_RS00415 0.13 -0.1 87,924 - EX31_RS00415 0.21 -2.4 87,944 - EX31_RS00415 0.23 -0.8 87,944 - EX31_RS00415 0.23 -0.9 87,997 + EX31_RS00415 0.30 -0.7 87,998 - EX31_RS00415 0.30 +1.5 88,232 + EX31_RS00415 0.58 +0.9 88,233 - EX31_RS00415 0.58 -1.2 88,349 - EX31_RS00415 0.73 -1.4 88,550 - +1.5 88,670 + +0.6 88,670 + +0.7 88,670 + -1.7 88,671 - +0.3 88,671 - -0.2 88,671 - +0.9 88,792 + -0.4 88,792 + +1.5 88,793 - -0.1 88,828 + +0.9 88,829 - -0.1 88,832 + -1.1 89,010 - EX31_RS00420 0.17 -0.0 89,010 - EX31_RS00420 0.17 -2.6 89,010 - EX31_RS00420 0.17 +0.2 89,010 - EX31_RS00420 0.17 -0.7 89,068 - EX31_RS00420 0.22 +1.5 89,068 - EX31_RS00420 0.22 -0.5 89,068 - EX31_RS00420 0.22 +1.9 89,068 - EX31_RS00420 0.22 +0.5 89,181 - EX31_RS00420 0.33 +0.9 89,181 - EX31_RS00420 0.33 -0.7 89,181 - EX31_RS00420 0.33 +0.9 89,293 - EX31_RS00420 0.44 +0.3 89,293 - EX31_RS00420 0.44 +0.9 89,293 - EX31_RS00420 0.44 -0.9 89,297 + EX31_RS00420 0.44 +0.3 89,298 - EX31_RS00420 0.44 -0.1 89,298 - EX31_RS00420 0.44 +0.2 89,374 - EX31_RS00420 0.51 -0.5 89,374 - EX31_RS00420 0.51 +0.3 89,394 + EX31_RS00420 0.53 +1.3 89,395 - EX31_RS00420 0.53 +0.3 89,395 - EX31_RS00420 0.53 -0.1 89,395 - EX31_RS00420 0.53 -0.9 89,441 + EX31_RS00420 0.58 +1.0 89,442 - EX31_RS00420 0.58 +0.4 89,545 - EX31_RS00420 0.68 -0.9 89,545 - EX31_RS00420 0.68 +0.4
Or see this region's nucleotide sequence