Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24065 and CA265_RS24070 are separated by 134 nucleotides CA265_RS24070 and CA265_RS24075 are separated by 133 nucleotides CA265_RS24075 and CA265_RS24080 are separated by 222 nucleotides CA265_RS24080 and CA265_RS24085 are separated by 9 nucleotides
CA265_RS24065: CA265_RS24065 - hypothetical protein, at 5,862,544 to 5,863,869
_RS24065
CA265_RS24070: CA265_RS24070 - hypothetical protein, at 5,864,004 to 5,864,711
_RS24070
CA265_RS24075: CA265_RS24075 - hypothetical protein, at 5,864,845 to 5,865,687
_RS24075
CA265_RS24080: CA265_RS24080 - DinB superfamily protein, at 5,865,910 to 5,866,362
_RS24080
CA265_RS24085: CA265_RS24085 - hypothetical protein, at 5,866,372 to 5,867,130
_RS24085
Position (kb) 5864
5865
5866 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5863.893 kb on + strand at 5863.907 kb on + strand at 5863.919 kb on + strand at 5864.003 kb on + strand at 5864.018 kb on - strand at 5864.061 kb on + strand at 5864.137 kb on + strand, within CA265_RS24070 at 5864.179 kb on - strand, within CA265_RS24070 at 5864.189 kb on + strand, within CA265_RS24070 at 5864.189 kb on + strand, within CA265_RS24070 at 5864.195 kb on - strand, within CA265_RS24070 at 5864.215 kb on - strand, within CA265_RS24070 at 5864.215 kb on - strand, within CA265_RS24070 at 5864.225 kb on + strand, within CA265_RS24070 at 5864.226 kb on - strand, within CA265_RS24070 at 5864.255 kb on - strand, within CA265_RS24070 at 5864.285 kb on - strand, within CA265_RS24070 at 5864.328 kb on + strand, within CA265_RS24070 at 5864.329 kb on - strand, within CA265_RS24070 at 5864.329 kb on - strand, within CA265_RS24070 at 5864.330 kb on + strand, within CA265_RS24070 at 5864.330 kb on + strand, within CA265_RS24070 at 5864.331 kb on - strand, within CA265_RS24070 at 5864.500 kb on + strand, within CA265_RS24070 at 5864.501 kb on - strand, within CA265_RS24070 at 5864.633 kb on + strand, within CA265_RS24070 at 5864.667 kb on - strand at 5864.908 kb on - strand at 5864.920 kb on - strand at 5864.965 kb on + strand, within CA265_RS24075 at 5864.966 kb on - strand, within CA265_RS24075 at 5865.053 kb on + strand, within CA265_RS24075 at 5865.101 kb on + strand, within CA265_RS24075 at 5865.110 kb on - strand, within CA265_RS24075 at 5865.111 kb on + strand, within CA265_RS24075 at 5865.112 kb on - strand, within CA265_RS24075 at 5865.145 kb on + strand, within CA265_RS24075 at 5865.146 kb on - strand, within CA265_RS24075 at 5865.150 kb on + strand, within CA265_RS24075 at 5865.151 kb on - strand, within CA265_RS24075 at 5865.156 kb on + strand at 5865.220 kb on - strand, within CA265_RS24075 at 5865.232 kb on - strand, within CA265_RS24075 at 5865.253 kb on - strand, within CA265_RS24075 at 5865.253 kb on - strand, within CA265_RS24075 at 5865.264 kb on - strand, within CA265_RS24075 at 5865.276 kb on + strand, within CA265_RS24075 at 5865.313 kb on - strand, within CA265_RS24075 at 5865.313 kb on - strand, within CA265_RS24075 at 5865.313 kb on - strand, within CA265_RS24075 at 5865.313 kb on - strand, within CA265_RS24075 at 5865.337 kb on - strand, within CA265_RS24075 at 5865.341 kb on - strand, within CA265_RS24075 at 5865.365 kb on - strand, within CA265_RS24075 at 5865.372 kb on + strand, within CA265_RS24075 at 5865.396 kb on + strand, within CA265_RS24075 at 5865.528 kb on + strand, within CA265_RS24075 at 5865.570 kb on + strand, within CA265_RS24075 at 5865.571 kb on - strand, within CA265_RS24075 at 5865.590 kb on + strand, within CA265_RS24075 at 5865.604 kb on - strand at 5865.650 kb on - strand at 5865.663 kb on - strand at 5865.803 kb on - strand at 5865.833 kb on + strand at 5865.833 kb on + strand at 5865.833 kb on + strand at 5865.835 kb on + strand at 5865.872 kb on + strand at 5865.872 kb on + strand at 5865.878 kb on - strand at 5865.926 kb on - strand at 5865.937 kb on - strand at 5865.937 kb on - strand at 5865.942 kb on - strand at 5865.945 kb on + strand at 5865.967 kb on + strand, within CA265_RS24080 at 5865.967 kb on + strand, within CA265_RS24080 at 5865.968 kb on - strand, within CA265_RS24080 at 5866.041 kb on + strand, within CA265_RS24080 at 5866.041 kb on + strand, within CA265_RS24080 at 5866.060 kb on + strand, within CA265_RS24080 at 5866.060 kb on + strand, within CA265_RS24080 at 5866.084 kb on + strand, within CA265_RS24080 at 5866.084 kb on + strand, within CA265_RS24080 at 5866.085 kb on - strand, within CA265_RS24080 at 5866.121 kb on - strand, within CA265_RS24080 at 5866.197 kb on + strand, within CA265_RS24080 at 5866.198 kb on - strand, within CA265_RS24080 at 5866.200 kb on - strand, within CA265_RS24080 at 5866.264 kb on + strand, within CA265_RS24080 at 5866.279 kb on - strand, within CA265_RS24080 at 5866.295 kb on - strand, within CA265_RS24080 at 5866.321 kb on - strand at 5866.362 kb on + strand at 5866.362 kb on + strand at 5866.362 kb on + strand at 5866.414 kb on - strand at 5866.432 kb on + strand at 5866.433 kb on - strand at 5866.441 kb on + strand at 5866.450 kb on - strand, within CA265_RS24085 at 5866.479 kb on + strand, within CA265_RS24085 at 5866.480 kb on - strand, within CA265_RS24085 at 5866.487 kb on + strand, within CA265_RS24085 at 5866.487 kb on + strand, within CA265_RS24085 at 5866.491 kb on + strand, within CA265_RS24085 at 5866.541 kb on + strand, within CA265_RS24085 at 5866.556 kb on - strand, within CA265_RS24085 at 5866.643 kb on - strand, within CA265_RS24085 at 5866.649 kb on + strand, within CA265_RS24085 at 5866.683 kb on - strand, within CA265_RS24085
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 5,863,893 + -1.1 5,863,907 + -0.6 5,863,919 + +0.4 5,864,003 + -0.5 5,864,018 - +0.2 5,864,061 + -1.9 5,864,137 + CA265_RS24070 0.19 -0.8 5,864,179 - CA265_RS24070 0.25 -0.9 5,864,189 + CA265_RS24070 0.26 +1.8 5,864,189 + CA265_RS24070 0.26 -0.2 5,864,195 - CA265_RS24070 0.27 +1.2 5,864,215 - CA265_RS24070 0.30 -0.2 5,864,215 - CA265_RS24070 0.30 -0.3 5,864,225 + CA265_RS24070 0.31 -0.8 5,864,226 - CA265_RS24070 0.31 -0.3 5,864,255 - CA265_RS24070 0.35 +0.4 5,864,285 - CA265_RS24070 0.40 +1.5 5,864,328 + CA265_RS24070 0.46 +0.8 5,864,329 - CA265_RS24070 0.46 +0.1 5,864,329 - CA265_RS24070 0.46 -1.0 5,864,330 + CA265_RS24070 0.46 +0.2 5,864,330 + CA265_RS24070 0.46 -0.1 5,864,331 - CA265_RS24070 0.46 -1.2 5,864,500 + CA265_RS24070 0.70 -0.5 5,864,501 - CA265_RS24070 0.70 +2.0 5,864,633 + CA265_RS24070 0.89 -0.3 5,864,667 - +0.3 5,864,908 - -0.3 5,864,920 - -0.3 5,864,965 + CA265_RS24075 0.14 +1.7 5,864,966 - CA265_RS24075 0.14 -0.3 5,865,053 + CA265_RS24075 0.25 -2.7 5,865,101 + CA265_RS24075 0.30 -0.8 5,865,110 - CA265_RS24075 0.31 +0.7 5,865,111 + CA265_RS24075 0.32 +1.5 5,865,112 - CA265_RS24075 0.32 -1.6 5,865,145 + CA265_RS24075 0.36 +0.6 5,865,146 - CA265_RS24075 0.36 -0.5 5,865,150 + CA265_RS24075 0.36 -0.6 5,865,151 - CA265_RS24075 0.36 -0.3 5,865,156 + +3.4 5,865,220 - CA265_RS24075 0.44 -0.4 5,865,232 - CA265_RS24075 0.46 -0.6 5,865,253 - CA265_RS24075 0.48 +0.2 5,865,253 - CA265_RS24075 0.48 -0.1 5,865,264 - CA265_RS24075 0.50 -0.5 5,865,276 + CA265_RS24075 0.51 +0.6 5,865,313 - CA265_RS24075 0.56 -2.1 5,865,313 - CA265_RS24075 0.56 -0.2 5,865,313 - CA265_RS24075 0.56 +0.1 5,865,313 - CA265_RS24075 0.56 -0.4 5,865,337 - CA265_RS24075 0.58 -0.8 5,865,341 - CA265_RS24075 0.59 -0.0 5,865,365 - CA265_RS24075 0.62 +0.2 5,865,372 + CA265_RS24075 0.63 -1.0 5,865,396 + CA265_RS24075 0.65 -1.0 5,865,528 + CA265_RS24075 0.81 -3.1 5,865,570 + CA265_RS24075 0.86 -1.5 5,865,571 - CA265_RS24075 0.86 -1.0 5,865,590 + CA265_RS24075 0.88 -0.8 5,865,604 - -1.7 5,865,650 - -0.8 5,865,663 - +0.2 5,865,803 - +0.4 5,865,833 + -0.9 5,865,833 + -0.1 5,865,833 + +2.1 5,865,835 + +0.8 5,865,872 + +0.7 5,865,872 + -0.8 5,865,878 - +0.0 5,865,926 - +0.5 5,865,937 - +0.2 5,865,937 - -1.0 5,865,942 - -0.2 5,865,945 + -0.7 5,865,967 + CA265_RS24080 0.13 -1.3 5,865,967 + CA265_RS24080 0.13 +0.5 5,865,968 - CA265_RS24080 0.13 +0.5 5,866,041 + CA265_RS24080 0.29 +0.9 5,866,041 + CA265_RS24080 0.29 -0.2 5,866,060 + CA265_RS24080 0.33 -0.1 5,866,060 + CA265_RS24080 0.33 -0.2 5,866,084 + CA265_RS24080 0.38 +0.0 5,866,084 + CA265_RS24080 0.38 +0.6 5,866,085 - CA265_RS24080 0.39 +0.8 5,866,121 - CA265_RS24080 0.47 -0.0 5,866,197 + CA265_RS24080 0.63 +0.4 5,866,198 - CA265_RS24080 0.64 -0.7 5,866,200 - CA265_RS24080 0.64 -1.3 5,866,264 + CA265_RS24080 0.78 +0.5 5,866,279 - CA265_RS24080 0.81 +0.3 5,866,295 - CA265_RS24080 0.85 +1.3 5,866,321 - +0.3 5,866,362 + -1.1 5,866,362 + -0.1 5,866,362 + -1.4 5,866,414 - +0.0 5,866,432 + -0.1 5,866,433 - +0.5 5,866,441 + +0.8 5,866,450 - CA265_RS24085 0.10 -0.2 5,866,479 + CA265_RS24085 0.14 -0.3 5,866,480 - CA265_RS24085 0.14 +0.2 5,866,487 + CA265_RS24085 0.15 -0.0 5,866,487 + CA265_RS24085 0.15 -0.5 5,866,491 + CA265_RS24085 0.16 -0.6 5,866,541 + CA265_RS24085 0.22 -1.0 5,866,556 - CA265_RS24085 0.24 -0.7 5,866,643 - CA265_RS24085 0.36 -0.3 5,866,649 + CA265_RS24085 0.36 +1.2 5,866,683 - CA265_RS24085 0.41 +0.9
Or see this region's nucleotide sequence