Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00750

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00745 and CA265_RS00750 are separated by 346 nucleotidesCA265_RS00750 and CA265_RS00755 are separated by 86 nucleotidesCA265_RS00755 and CA265_RS00760 are separated by 71 nucleotides CA265_RS00745: CA265_RS00745 - glucuronyl hydrolase, at 180,071 to 181,261 _RS00745 CA265_RS00750: CA265_RS00750 - hypothetical protein, at 181,608 to 182,831 _RS00750 CA265_RS00755: CA265_RS00755 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 182,918 to 183,757 _RS00755 CA265_RS00760: CA265_RS00760 - 2-deoxy-D-gluconate 3-dehydrogenase, at 183,829 to 184,593 _RS00760 Position (kb) 181 182 183Strain fitness (log2 ratio) -2 -1 0 1at 180.670 kb on + strand, within CA265_RS00745at 180.722 kb on + strand, within CA265_RS00745at 180.732 kb on + strand, within CA265_RS00745at 180.737 kb on + strand, within CA265_RS00745at 180.738 kb on - strand, within CA265_RS00745at 180.830 kb on + strand, within CA265_RS00745at 180.830 kb on + strand, within CA265_RS00745at 180.830 kb on + strand, within CA265_RS00745at 180.831 kb on - strand, within CA265_RS00745at 180.831 kb on - strand, within CA265_RS00745at 180.836 kb on + strand, within CA265_RS00745at 180.836 kb on + strand, within CA265_RS00745at 180.837 kb on - strand, within CA265_RS00745at 180.837 kb on - strand, within CA265_RS00745at 180.839 kb on - strand, within CA265_RS00745at 180.904 kb on + strand, within CA265_RS00745at 180.907 kb on - strand, within CA265_RS00745at 180.910 kb on - strand, within CA265_RS00745at 180.940 kb on - strand, within CA265_RS00745at 181.024 kb on - strand, within CA265_RS00745at 181.037 kb on + strand, within CA265_RS00745at 181.038 kb on - strand, within CA265_RS00745at 181.092 kb on - strand, within CA265_RS00745at 181.112 kb on + strand, within CA265_RS00745at 181.112 kb on + strand, within CA265_RS00745at 181.113 kb on - strand, within CA265_RS00745at 181.146 kb on + strandat 181.157 kb on - strandat 181.157 kb on - strandat 181.259 kb on + strandat 181.260 kb on - strandat 181.462 kb on + strandat 181.507 kb on + strandat 181.508 kb on - strandat 181.807 kb on + strand, within CA265_RS00750at 181.905 kb on - strand, within CA265_RS00750at 182.007 kb on - strand, within CA265_RS00750at 182.007 kb on - strand, within CA265_RS00750at 182.098 kb on + strand, within CA265_RS00750at 182.117 kb on - strand, within CA265_RS00750at 182.121 kb on - strand, within CA265_RS00750at 182.136 kb on + strand, within CA265_RS00750at 182.252 kb on - strand, within CA265_RS00750at 182.268 kb on - strand, within CA265_RS00750at 182.299 kb on - strand, within CA265_RS00750at 182.410 kb on - strand, within CA265_RS00750at 182.422 kb on + strand, within CA265_RS00750at 182.422 kb on + strand, within CA265_RS00750at 182.451 kb on + strand, within CA265_RS00750at 182.478 kb on + strand, within CA265_RS00750at 182.483 kb on + strand, within CA265_RS00750at 182.539 kb on - strand, within CA265_RS00750at 182.585 kb on + strand, within CA265_RS00750at 182.585 kb on + strand, within CA265_RS00750at 182.590 kb on + strand, within CA265_RS00750at 182.591 kb on - strand, within CA265_RS00750at 182.592 kb on + strand, within CA265_RS00750at 182.593 kb on - strand, within CA265_RS00750at 182.674 kb on - strand, within CA265_RS00750at 182.692 kb on + strand, within CA265_RS00750at 182.692 kb on + strand, within CA265_RS00750at 182.693 kb on - strand, within CA265_RS00750at 182.693 kb on - strand, within CA265_RS00750at 182.695 kb on - strand, within CA265_RS00750at 182.695 kb on - strand, within CA265_RS00750at 182.695 kb on - strand, within CA265_RS00750at 182.696 kb on + strand, within CA265_RS00750at 182.697 kb on - strand, within CA265_RS00750at 182.717 kb on - strandat 182.817 kb on - strandat 182.827 kb on - strandat 182.830 kb on - strandat 182.838 kb on + strandat 182.839 kb on - strandat 182.841 kb on + strandat 182.846 kb on - strandat 182.853 kb on - strandat 182.962 kb on + strandat 182.963 kb on - strandat 183.036 kb on + strand, within CA265_RS00755at 183.042 kb on + strand, within CA265_RS00755at 183.060 kb on - strand, within CA265_RS00755at 183.060 kb on - strand, within CA265_RS00755at 183.061 kb on + strand, within CA265_RS00755at 183.061 kb on + strand, within CA265_RS00755at 183.061 kb on + strand, within CA265_RS00755at 183.061 kb on + strand, within CA265_RS00755at 183.062 kb on - strand, within CA265_RS00755at 183.062 kb on - strand, within CA265_RS00755at 183.062 kb on - strand, within CA265_RS00755at 183.062 kb on - strand, within CA265_RS00755at 183.062 kb on - strand, within CA265_RS00755at 183.096 kb on + strand, within CA265_RS00755at 183.160 kb on + strand, within CA265_RS00755at 183.161 kb on - strand, within CA265_RS00755at 183.163 kb on + strandat 183.181 kb on + strand, within CA265_RS00755at 183.218 kb on + strand, within CA265_RS00755at 183.219 kb on - strand, within CA265_RS00755at 183.220 kb on + strand, within CA265_RS00755at 183.275 kb on - strand, within CA265_RS00755at 183.298 kb on - strand, within CA265_RS00755at 183.299 kb on + strand, within CA265_RS00755at 183.326 kb on - strand, within CA265_RS00755at 183.326 kb on - strand, within CA265_RS00755at 183.346 kb on - strand, within CA265_RS00755at 183.461 kb on - strand, within CA265_RS00755at 183.508 kb on + strand, within CA265_RS00755at 183.517 kb on + strand, within CA265_RS00755at 183.631 kb on + strand, within CA265_RS00755at 183.632 kb on - strand, within CA265_RS00755at 183.686 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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180,670 + CA265_RS00745 0.50 -0.3
180,722 + CA265_RS00745 0.55 -0.7
180,732 + CA265_RS00745 0.55 +0.5
180,737 + CA265_RS00745 0.56 -0.2
180,738 - CA265_RS00745 0.56 +0.8
180,830 + CA265_RS00745 0.64 +0.2
180,830 + CA265_RS00745 0.64 -1.6
180,830 + CA265_RS00745 0.64 -1.9
180,831 - CA265_RS00745 0.64 -0.1
180,831 - CA265_RS00745 0.64 +0.6
180,836 + CA265_RS00745 0.64 -0.7
180,836 + CA265_RS00745 0.64 -1.0
180,837 - CA265_RS00745 0.64 +0.5
180,837 - CA265_RS00745 0.64 -1.6
180,839 - CA265_RS00745 0.64 -0.2
180,904 + CA265_RS00745 0.70 +0.0
180,907 - CA265_RS00745 0.70 -0.8
180,910 - CA265_RS00745 0.70 -1.9
180,940 - CA265_RS00745 0.73 -0.6
181,024 - CA265_RS00745 0.80 -0.8
181,037 + CA265_RS00745 0.81 +0.4
181,038 - CA265_RS00745 0.81 +0.5
181,092 - CA265_RS00745 0.86 +0.5
181,112 + CA265_RS00745 0.87 +0.6
181,112 + CA265_RS00745 0.87 -0.3
181,113 - CA265_RS00745 0.87 -0.0
181,146 + -0.4
181,157 - +0.2
181,157 - -0.5
181,259 + +0.8
181,260 - -0.1
181,462 + +0.1
181,507 + +0.3
181,508 - -0.8
181,807 + CA265_RS00750 0.16 -0.8
181,905 - CA265_RS00750 0.24 -1.2
182,007 - CA265_RS00750 0.33 -0.2
182,007 - CA265_RS00750 0.33 -0.1
182,098 + CA265_RS00750 0.40 -0.2
182,117 - CA265_RS00750 0.42 +1.1
182,121 - CA265_RS00750 0.42 +0.2
182,136 + CA265_RS00750 0.43 +0.2
182,252 - CA265_RS00750 0.53 +0.1
182,268 - CA265_RS00750 0.54 -0.6
182,299 - CA265_RS00750 0.56 -2.0
182,410 - CA265_RS00750 0.66 +0.3
182,422 + CA265_RS00750 0.67 +0.5
182,422 + CA265_RS00750 0.67 +1.1
182,451 + CA265_RS00750 0.69 +0.8
182,478 + CA265_RS00750 0.71 -1.7
182,483 + CA265_RS00750 0.71 +0.2
182,539 - CA265_RS00750 0.76 -0.4
182,585 + CA265_RS00750 0.80 -1.0
182,585 + CA265_RS00750 0.80 +1.2
182,590 + CA265_RS00750 0.80 -1.0
182,591 - CA265_RS00750 0.80 -0.5
182,592 + CA265_RS00750 0.80 -1.5
182,593 - CA265_RS00750 0.80 -0.1
182,674 - CA265_RS00750 0.87 -0.3
182,692 + CA265_RS00750 0.89 -0.3
182,692 + CA265_RS00750 0.89 +0.8
182,693 - CA265_RS00750 0.89 -2.1
182,693 - CA265_RS00750 0.89 +0.6
182,695 - CA265_RS00750 0.89 -2.0
182,695 - CA265_RS00750 0.89 +0.1
182,695 - CA265_RS00750 0.89 -1.2
182,696 + CA265_RS00750 0.89 -0.5
182,697 - CA265_RS00750 0.89 +0.5
182,717 - -1.2
182,817 - +0.8
182,827 - +0.4
182,830 - +0.7
182,838 + +0.8
182,839 - -0.9
182,841 + +0.1
182,846 - +0.5
182,853 - +0.1
182,962 + -0.1
182,963 - +0.2
183,036 + CA265_RS00755 0.14 +0.0
183,042 + CA265_RS00755 0.15 -1.0
183,060 - CA265_RS00755 0.17 -1.9
183,060 - CA265_RS00755 0.17 -0.0
183,061 + CA265_RS00755 0.17 +0.3
183,061 + CA265_RS00755 0.17 +0.3
183,061 + CA265_RS00755 0.17 -0.2
183,061 + CA265_RS00755 0.17 +1.3
183,062 - CA265_RS00755 0.17 -0.3
183,062 - CA265_RS00755 0.17 -0.2
183,062 - CA265_RS00755 0.17 +1.2
183,062 - CA265_RS00755 0.17 +0.3
183,062 - CA265_RS00755 0.17 -0.8
183,096 + CA265_RS00755 0.21 -2.0
183,160 + CA265_RS00755 0.29 -0.6
183,161 - CA265_RS00755 0.29 +1.2
183,163 + -0.5
183,181 + CA265_RS00755 0.31 +1.2
183,218 + CA265_RS00755 0.36 +0.6
183,219 - CA265_RS00755 0.36 +0.9
183,220 + CA265_RS00755 0.36 -1.1
183,275 - CA265_RS00755 0.42 +0.3
183,298 - CA265_RS00755 0.45 -0.4
183,299 + CA265_RS00755 0.45 -0.3
183,326 - CA265_RS00755 0.49 +0.5
183,326 - CA265_RS00755 0.49 +0.4
183,346 - CA265_RS00755 0.51 +0.1
183,461 - CA265_RS00755 0.65 -0.1
183,508 + CA265_RS00755 0.70 +1.3
183,517 + CA265_RS00755 0.71 -0.0
183,631 + CA265_RS00755 0.85 +0.0
183,632 - CA265_RS00755 0.85 +0.0
183,686 - -1.3

Or see this region's nucleotide sequence