Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36580 and BPHYT_RS36585 are separated by 134 nucleotides BPHYT_RS36585 and BPHYT_RS36590 are separated by 51 nucleotides BPHYT_RS36590 and BPHYT_RS36595 are separated by 191 nucleotides BPHYT_RS36595 and BPHYT_RS36600 are separated by 32 nucleotides
BPHYT_RS36580: BPHYT_RS36580 - hypothetical protein, at 117,828 to 118,277
_RS36580
BPHYT_RS36585: BPHYT_RS36585 - hypothetical protein, at 118,412 to 119,104
_RS36585
BPHYT_RS36590: BPHYT_RS36590 - hypothetical protein, at 119,156 to 119,395
_RS36590
BPHYT_RS36595: BPHYT_RS36595 - hypothetical protein, at 119,587 to 120,114
_RS36595
BPHYT_RS36600: BPHYT_RS36600 - lytic transglycosylase, at 120,147 to 120,596
_RS36600
Position (kb) 119
120 Strain fitness (log2 ratio) -2
-1
0
1 at 118.317 kb on + strand at 118.317 kb on + strand at 118.395 kb on + strand at 118.395 kb on + strand at 118.395 kb on + strand at 118.396 kb on - strand at 118.396 kb on - strand at 118.413 kb on + strand at 118.413 kb on + strand at 118.414 kb on - strand at 118.464 kb on + strand at 118.464 kb on + strand at 118.670 kb on + strand, within BPHYT_RS36585 at 118.968 kb on - strand, within BPHYT_RS36585 at 119.001 kb on + strand, within BPHYT_RS36585 at 119.157 kb on + strand at 119.157 kb on + strand at 119.289 kb on + strand, within BPHYT_RS36590 at 119.289 kb on + strand, within BPHYT_RS36590 at 119.292 kb on + strand, within BPHYT_RS36590 at 119.536 kb on - strand at 119.862 kb on + strand, within BPHYT_RS36595 at 119.890 kb on + strand, within BPHYT_RS36595 at 119.995 kb on + strand, within BPHYT_RS36595 at 120.030 kb on + strand, within BPHYT_RS36595 at 120.046 kb on + strand, within BPHYT_RS36595 at 120.128 kb on + strand at 120.312 kb on + strand, within BPHYT_RS36600
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 118,317 + +0.2 118,317 + +0.1 118,395 + +0.6 118,395 + +0.3 118,395 + +1.2 118,396 - +0.9 118,396 - -0.3 118,413 + +0.5 118,413 + -0.9 118,414 - +1.5 118,464 + +1.1 118,464 + +1.1 118,670 + BPHYT_RS36585 0.37 -1.1 118,968 - BPHYT_RS36585 0.80 +1.0 119,001 + BPHYT_RS36585 0.85 +0.4 119,157 + +0.0 119,157 + -0.7 119,289 + BPHYT_RS36590 0.55 +0.7 119,289 + BPHYT_RS36590 0.55 +0.3 119,292 + BPHYT_RS36590 0.57 +1.2 119,536 - -1.4 119,862 + BPHYT_RS36595 0.52 +0.4 119,890 + BPHYT_RS36595 0.57 -0.2 119,995 + BPHYT_RS36595 0.77 +0.2 120,030 + BPHYT_RS36595 0.84 -1.7 120,046 + BPHYT_RS36595 0.87 +0.6 120,128 + -2.1 120,312 + BPHYT_RS36600 0.37 +0.7
Or see this region's nucleotide sequence