Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35955

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35950 and BPHYT_RS35955 are separated by 84 nucleotidesBPHYT_RS35955 and BPHYT_RS35960 are separated by 876 nucleotides BPHYT_RS35950: BPHYT_RS35950 - chemotaxis protein CheY, at 23,629 to 24,282 _RS35950 BPHYT_RS35955: BPHYT_RS35955 - hypothetical protein, at 24,367 to 24,672 _RS35955 BPHYT_RS35960: BPHYT_RS35960 - ATPase, at 25,549 to 27,171 _RS35960 Position (kb) 24 25Strain fitness (log2 ratio) -1 0 1 2at 23.453 kb on + strandat 23.458 kb on + strandat 23.495 kb on - strandat 23.610 kb on + strandat 23.669 kb on - strandat 24.287 kb on + strandat 24.339 kb on + strandat 24.341 kb on + strandat 24.341 kb on + strandat 24.342 kb on - strandat 24.350 kb on - strandat 24.382 kb on - strandat 24.454 kb on - strand, within BPHYT_RS35955at 24.671 kb on - strandat 24.720 kb on - strandat 24.820 kb on + strandat 25.081 kb on + strandat 25.081 kb on + strandat 25.259 kb on + strandat 25.308 kb on + strandat 25.309 kb on - strandat 25.451 kb on + strandat 25.470 kb on - strandat 25.494 kb on - strandat 25.543 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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23,453 + -0.3
23,458 + +1.6
23,495 - -0.6
23,610 + +1.1
23,669 - +0.0
24,287 + +1.1
24,339 + +0.8
24,341 + +2.1
24,341 + -0.3
24,342 - -0.1
24,350 - -0.4
24,382 - -0.1
24,454 - BPHYT_RS35955 0.28 +1.4
24,671 - +0.7
24,720 - -0.5
24,820 + +0.3
25,081 + +0.3
25,081 + +0.6
25,259 + -0.0
25,308 + -1.2
25,309 - -0.4
25,451 + +0.3
25,470 - +1.1
25,494 - +1.6
25,543 + +0.2

Or see this region's nucleotide sequence