Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS34820 and BPHYT_RS34825 are separated by 10 nucleotides BPHYT_RS34825 and BPHYT_RS34830 are separated by 343 nucleotides
BPHYT_RS34820: BPHYT_RS34820 - radical SAM protein, at 3,417,196 to 3,418,350
_RS34820
BPHYT_RS34825: BPHYT_RS34825 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 3,418,361 to 3,419,305
_RS34825
BPHYT_RS34830: BPHYT_RS34830 - phytoene synthase, at 3,419,649 to 3,420,515
_RS34830
Position (kb)
3418
3419
3420 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3418.481 kb on + strand, within BPHYT_RS34825 at 3418.482 kb on - strand, within BPHYT_RS34825 at 3418.588 kb on - strand, within BPHYT_RS34825 at 3418.643 kb on - strand, within BPHYT_RS34825 at 3418.643 kb on - strand at 3418.723 kb on - strand, within BPHYT_RS34825 at 3418.827 kb on + strand, within BPHYT_RS34825 at 3418.828 kb on - strand, within BPHYT_RS34825 at 3418.828 kb on - strand, within BPHYT_RS34825 at 3418.828 kb on - strand, within BPHYT_RS34825 at 3418.981 kb on - strand, within BPHYT_RS34825 at 3418.981 kb on - strand, within BPHYT_RS34825 at 3419.205 kb on + strand, within BPHYT_RS34825 at 3419.205 kb on + strand, within BPHYT_RS34825 at 3419.206 kb on - strand, within BPHYT_RS34825 at 3419.206 kb on - strand, within BPHYT_RS34825 at 3419.206 kb on - strand, within BPHYT_RS34825 at 3419.206 kb on - strand, within BPHYT_RS34825 at 3419.228 kb on + strand at 3419.305 kb on + strand at 3419.306 kb on - strand at 3419.376 kb on + strand at 3419.376 kb on + strand at 3419.377 kb on - strand at 3419.381 kb on - strand at 3419.437 kb on + strand at 3419.592 kb on + strand at 3419.592 kb on + strand at 3419.593 kb on - strand at 3419.593 kb on - strand at 3419.593 kb on - strand at 3419.593 kb on - strand at 3419.593 kb on - strand at 3419.596 kb on + strand at 3419.597 kb on - strand at 3419.597 kb on - strand at 3419.726 kb on + strand at 3419.727 kb on - strand at 3419.727 kb on - strand at 3419.727 kb on - strand at 3419.727 kb on - strand at 3419.727 kb on - strand at 3419.731 kb on - strand at 3419.903 kb on + strand, within BPHYT_RS34830 at 3419.903 kb on + strand, within BPHYT_RS34830 at 3419.904 kb on - strand, within BPHYT_RS34830 at 3419.904 kb on - strand, within BPHYT_RS34830 at 3419.904 kb on - strand, within BPHYT_RS34830 at 3419.970 kb on + strand, within BPHYT_RS34830 at 3419.971 kb on - strand, within BPHYT_RS34830 at 3420.156 kb on + strand, within BPHYT_RS34830 at 3420.173 kb on + strand, within BPHYT_RS34830 at 3420.174 kb on - strand, within BPHYT_RS34830
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 3,418,481 + BPHYT_RS34825 0.13 -0.8 3,418,482 - BPHYT_RS34825 0.13 +1.8 3,418,588 - BPHYT_RS34825 0.24 +0.6 3,418,643 - BPHYT_RS34825 0.30 +0.2 3,418,643 - +1.3 3,418,723 - BPHYT_RS34825 0.38 +0.6 3,418,827 + BPHYT_RS34825 0.49 -1.6 3,418,828 - BPHYT_RS34825 0.49 -0.2 3,418,828 - BPHYT_RS34825 0.49 -0.0 3,418,828 - BPHYT_RS34825 0.49 +1.4 3,418,981 - BPHYT_RS34825 0.66 +0.7 3,418,981 - BPHYT_RS34825 0.66 +0.4 3,419,205 + BPHYT_RS34825 0.89 -0.9 3,419,205 + BPHYT_RS34825 0.89 +0.3 3,419,206 - BPHYT_RS34825 0.89 +1.9 3,419,206 - BPHYT_RS34825 0.89 -0.4 3,419,206 - BPHYT_RS34825 0.89 +2.0 3,419,206 - BPHYT_RS34825 0.89 +2.1 3,419,228 + -0.3 3,419,305 + +1.2 3,419,306 - -0.2 3,419,376 + -1.0 3,419,376 + -1.6 3,419,377 - +1.0 3,419,381 - +0.4 3,419,437 + +0.1 3,419,592 + -0.4 3,419,592 + +1.3 3,419,593 - -0.4 3,419,593 - -1.1 3,419,593 - -0.4 3,419,593 - -0.2 3,419,593 - -0.8 3,419,596 + +0.9 3,419,597 - -0.1 3,419,597 - -0.6 3,419,726 + -0.2 3,419,727 - -1.2 3,419,727 - -2.2 3,419,727 - +0.6 3,419,727 - +1.2 3,419,727 - -0.7 3,419,731 - -1.2 3,419,903 + BPHYT_RS34830 0.29 +0.4 3,419,903 + BPHYT_RS34830 0.29 -0.2 3,419,904 - BPHYT_RS34830 0.29 -0.7 3,419,904 - BPHYT_RS34830 0.29 -1.4 3,419,904 - BPHYT_RS34830 0.29 -0.5 3,419,970 + BPHYT_RS34830 0.37 -0.7 3,419,971 - BPHYT_RS34830 0.37 -2.0 3,420,156 + BPHYT_RS34830 0.58 -0.7 3,420,173 + BPHYT_RS34830 0.60 -0.1 3,420,174 - BPHYT_RS34830 0.61 -1.3
Or see this region's nucleotide sequence