Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27275

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27270 and BPHYT_RS27275 are separated by 295 nucleotidesBPHYT_RS27275 and BPHYT_RS27280 are separated by 194 nucleotides BPHYT_RS27270: BPHYT_RS27270 - photosystem reaction center subunit H, at 1,692,418 to 1,692,852 _RS27270 BPHYT_RS27275: BPHYT_RS27275 - membrane protein, at 1,693,148 to 1,693,723 _RS27275 BPHYT_RS27280: BPHYT_RS27280 - heat shock protein Hsp20, at 1,693,918 to 1,694,553 _RS27280 Position (kb) 1693 1694Strain fitness (log2 ratio) -1 0 1at 1692.407 kb on + strandat 1692.474 kb on - strand, within BPHYT_RS27270at 1692.646 kb on - strand, within BPHYT_RS27270at 1692.942 kb on - strandat 1692.973 kb on - strandat 1693.252 kb on - strand, within BPHYT_RS27275at 1693.418 kb on - strand, within BPHYT_RS27275at 1693.620 kb on - strand, within BPHYT_RS27275at 1693.713 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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1,692,407 + -0.4
1,692,474 - BPHYT_RS27270 0.13 +0.6
1,692,646 - BPHYT_RS27270 0.52 +1.3
1,692,942 - +0.8
1,692,973 - -0.2
1,693,252 - BPHYT_RS27275 0.18 -0.3
1,693,418 - BPHYT_RS27275 0.47 +0.0
1,693,620 - BPHYT_RS27275 0.82 +0.1
1,693,713 + -0.5

Or see this region's nucleotide sequence