Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10260

Experiment: outer cut, LB soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS10255 and BPHYT_RS10260 are separated by 65 nucleotidesBPHYT_RS10260 and BPHYT_RS10265 are separated by 28 nucleotides BPHYT_RS10255: BPHYT_RS10255 - LysR family transcriptional regulator, at 2,331,356 to 2,332,252 _RS10255 BPHYT_RS10260: BPHYT_RS10260 - hypothetical protein, at 2,332,318 to 2,332,719 _RS10260 BPHYT_RS10265: BPHYT_RS10265 - aminotransferase, at 2,332,748 to 2,333,872 _RS10265 Position (kb) 2332 2333Strain fitness (log2 ratio) -1 0 1at 2331.378 kb on - strandat 2331.434 kb on - strandat 2331.568 kb on - strand, within BPHYT_RS10255at 2332.108 kb on - strand, within BPHYT_RS10255at 2332.475 kb on - strand, within BPHYT_RS10260at 2332.972 kb on - strand, within BPHYT_RS10265at 2333.261 kb on - strand, within BPHYT_RS10265at 2333.292 kb on + strand, within BPHYT_RS10265

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
remove
2,331,378 - +0.3
2,331,434 - -0.0
2,331,568 - BPHYT_RS10255 0.24 -0.6
2,332,108 - BPHYT_RS10255 0.84 +0.0
2,332,475 - BPHYT_RS10260 0.39 +0.9
2,332,972 - BPHYT_RS10265 0.20 +0.6
2,333,261 - BPHYT_RS10265 0.46 +0.3
2,333,292 + BPHYT_RS10265 0.48 +0.5

Or see this region's nucleotide sequence