Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03930

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03925 and BPHYT_RS03930 are separated by 234 nucleotidesBPHYT_RS03930 and BPHYT_RS03935 overlap by 4 nucleotides BPHYT_RS03925: BPHYT_RS03925 - LysR family transcriptional regulator, at 887,441 to 888,334 _RS03925 BPHYT_RS03930: BPHYT_RS03930 - 3-hydroxy-3-methylglutaryl-CoA lyase, at 888,569 to 889,546 _RS03930 BPHYT_RS03935: BPHYT_RS03935 - CoA transferase, at 889,543 to 890,781 _RS03935 Position (kb) 888 889 890Strain fitness (log2 ratio) -1 0 1 2at 887.702 kb on + strand, within BPHYT_RS03925at 888.099 kb on - strand, within BPHYT_RS03925at 888.107 kb on + strand, within BPHYT_RS03925at 888.108 kb on - strand, within BPHYT_RS03925at 888.206 kb on + strand, within BPHYT_RS03925at 888.561 kb on - strandat 888.786 kb on - strand, within BPHYT_RS03930at 888.896 kb on - strand, within BPHYT_RS03930at 888.970 kb on + strand, within BPHYT_RS03930at 889.464 kb on - strandat 889.536 kb on + strandat 889.537 kb on - strandat 889.636 kb on - strandat 889.936 kb on + strand, within BPHYT_RS03935at 889.936 kb on + strand, within BPHYT_RS03935at 889.937 kb on - strandat 889.969 kb on + strand, within BPHYT_RS03935at 890.024 kb on - strand, within BPHYT_RS03935at 890.024 kb on - strand, within BPHYT_RS03935at 890.025 kb on + strand, within BPHYT_RS03935at 890.025 kb on + strand, within BPHYT_RS03935at 890.026 kb on - strand, within BPHYT_RS03935at 890.395 kb on - strand, within BPHYT_RS03935

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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887,702 + BPHYT_RS03925 0.29 +1.6
888,099 - BPHYT_RS03925 0.74 +2.2
888,107 + BPHYT_RS03925 0.74 +1.2
888,108 - BPHYT_RS03925 0.75 +0.1
888,206 + BPHYT_RS03925 0.86 -0.2
888,561 - +0.6
888,786 - BPHYT_RS03930 0.22 +0.7
888,896 - BPHYT_RS03930 0.33 +0.0
888,970 + BPHYT_RS03930 0.41 +1.6
889,464 - +0.9
889,536 + +0.9
889,537 - -1.1
889,636 - -0.3
889,936 + BPHYT_RS03935 0.32 -0.4
889,936 + BPHYT_RS03935 0.32 -0.3
889,937 - -0.8
889,969 + BPHYT_RS03935 0.34 +0.5
890,024 - BPHYT_RS03935 0.39 +0.1
890,024 - BPHYT_RS03935 0.39 +0.1
890,025 + BPHYT_RS03935 0.39 -1.2
890,025 + BPHYT_RS03935 0.39 -0.9
890,026 - BPHYT_RS03935 0.39 +0.2
890,395 - BPHYT_RS03935 0.69 +0.1

Or see this region's nucleotide sequence