Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01810 and BPHYT_RS01815 are separated by 46 nucleotides BPHYT_RS01815 and BPHYT_RS01820 are separated by 16 nucleotides
BPHYT_RS01810: BPHYT_RS01810 - sugar ABC transporter permease, at 410,690 to 411,649
_RS01810
BPHYT_RS01815: BPHYT_RS01815 - sugar ABC transporter permease, at 411,696 to 412,706
_RS01815
BPHYT_RS01820: BPHYT_RS01820 - sugar ABC transporter ATP-binding protein, at 412,723 to 414,357
_RS01820
Position (kb) 411
412
413 Strain fitness (log2 ratio) -2
-1
0
1
2 at 410.793 kb on + strand, within BPHYT_RS01810 at 411.040 kb on - strand, within BPHYT_RS01810 at 411.319 kb on + strand, within BPHYT_RS01810 at 411.417 kb on + strand, within BPHYT_RS01810 at 411.541 kb on - strand, within BPHYT_RS01810 at 411.541 kb on - strand, within BPHYT_RS01810 at 411.565 kb on - strand at 411.602 kb on + strand at 411.793 kb on + strand at 411.841 kb on + strand, within BPHYT_RS01815 at 411.995 kb on - strand, within BPHYT_RS01815 at 412.037 kb on - strand, within BPHYT_RS01815 at 412.137 kb on + strand, within BPHYT_RS01815 at 412.137 kb on + strand, within BPHYT_RS01815 at 412.665 kb on + strand at 412.666 kb on - strand at 412.724 kb on + strand at 412.725 kb on - strand at 412.761 kb on + strand at 412.762 kb on - strand at 412.762 kb on - strand at 413.303 kb on + strand, within BPHYT_RS01820 at 413.323 kb on - strand, within BPHYT_RS01820 at 413.323 kb on - strand, within BPHYT_RS01820 at 413.705 kb on + strand, within BPHYT_RS01820
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 410,793 + BPHYT_RS01810 0.11 -0.1 411,040 - BPHYT_RS01810 0.36 +0.1 411,319 + BPHYT_RS01810 0.66 +1.9 411,417 + BPHYT_RS01810 0.76 -0.3 411,541 - BPHYT_RS01810 0.89 +1.0 411,541 - BPHYT_RS01810 0.89 -1.1 411,565 - -0.7 411,602 + -0.5 411,793 + +0.4 411,841 + BPHYT_RS01815 0.14 +0.2 411,995 - BPHYT_RS01815 0.30 -1.9 412,037 - BPHYT_RS01815 0.34 -0.7 412,137 + BPHYT_RS01815 0.44 +1.5 412,137 + BPHYT_RS01815 0.44 -0.6 412,665 + -0.1 412,666 - -0.4 412,724 + +0.7 412,725 - +0.5 412,761 + +0.3 412,762 - +0.5 412,762 - +1.1 413,303 + BPHYT_RS01820 0.35 +0.1 413,323 - BPHYT_RS01820 0.37 +0.7 413,323 - BPHYT_RS01820 0.37 +0.2 413,705 + BPHYT_RS01820 0.60 +0.8
Or see this region's nucleotide sequence