Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_18470 and AO356_18475 are separated by 226 nucleotides AO356_18475 and AO356_18480 are separated by 7 nucleotides AO356_18480 and AO356_18485 are separated by 107 nucleotides AO356_18485 and AO356_18490 are separated by 1 nucleotides
AO356_18470: AO356_18470 - LTXXQ domain protein, at 4,158,913 to 4,159,350
_18470
AO356_18475: AO356_18475 - chemotaxis protein CheY, at 4,159,577 to 4,160,254
_18475
AO356_18480: AO356_18480 - translation initiation factor 2, at 4,160,262 to 4,160,672
_18480
AO356_18485: AO356_18485 - hypothetical protein, at 4,160,780 to 4,161,079
_18485
AO356_18490: AO356_18490 - septation protein A, at 4,161,081 to 4,161,677
_18490
Position (kb) 4160
4161 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4159.445 kb on + strand at 4159.544 kb on + strand at 4159.545 kb on - strand at 4159.545 kb on - strand at 4159.545 kb on - strand at 4159.587 kb on + strand at 4159.587 kb on + strand at 4159.588 kb on - strand at 4159.588 kb on - strand at 4159.588 kb on - strand at 4159.588 kb on - strand at 4159.588 kb on - strand at 4159.590 kb on + strand at 4159.590 kb on + strand at 4159.590 kb on + strand at 4159.590 kb on + strand at 4159.590 kb on + strand at 4159.590 kb on + strand at 4159.590 kb on + strand at 4159.590 kb on + strand at 4159.591 kb on - strand at 4159.593 kb on + strand at 4159.593 kb on + strand at 4159.692 kb on + strand, within AO356_18475 at 4159.693 kb on - strand, within AO356_18475 at 4159.959 kb on + strand, within AO356_18475 at 4159.960 kb on - strand, within AO356_18475 at 4160.234 kb on + strand at 4160.234 kb on + strand at 4160.234 kb on + strand at 4160.234 kb on + strand at 4160.234 kb on + strand at 4160.235 kb on - strand at 4160.235 kb on - strand at 4160.235 kb on - strand at 4160.235 kb on - strand at 4160.235 kb on - strand at 4160.235 kb on - strand at 4160.235 kb on - strand at 4160.240 kb on + strand at 4160.241 kb on - strand at 4160.241 kb on - strand at 4160.268 kb on + strand at 4160.269 kb on - strand at 4160.288 kb on + strand at 4160.288 kb on + strand at 4160.288 kb on + strand at 4160.288 kb on + strand at 4160.288 kb on + strand at 4160.289 kb on - strand at 4160.309 kb on + strand, within AO356_18480 at 4160.310 kb on - strand, within AO356_18480 at 4160.328 kb on + strand, within AO356_18480 at 4160.699 kb on + strand at 4160.699 kb on + strand at 4160.700 kb on - strand at 4160.726 kb on - strand at 4160.781 kb on + strand at 4160.781 kb on + strand at 4160.823 kb on + strand, within AO356_18485 at 4161.072 kb on + strand at 4161.072 kb on + strand at 4161.073 kb on - strand at 4161.073 kb on - strand at 4161.073 kb on - strand at 4161.073 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 4,159,445 + -0.1 4,159,544 + -1.3 4,159,545 - +3.6 4,159,545 - +0.7 4,159,545 - +0.6 4,159,587 + -1.4 4,159,587 + +2.1 4,159,588 - -1.0 4,159,588 - +1.0 4,159,588 - -0.3 4,159,588 - +0.8 4,159,588 - -1.8 4,159,590 + -0.1 4,159,590 + +0.5 4,159,590 + +2.6 4,159,590 + +0.6 4,159,590 + -0.4 4,159,590 + -0.8 4,159,590 + -0.0 4,159,590 + -0.1 4,159,591 - -0.2 4,159,593 + +0.4 4,159,593 + +0.7 4,159,692 + AO356_18475 0.17 +0.1 4,159,693 - AO356_18475 0.17 +0.6 4,159,959 + AO356_18475 0.56 +0.2 4,159,960 - AO356_18475 0.56 +0.3 4,160,234 + +0.8 4,160,234 + -0.2 4,160,234 + +0.6 4,160,234 + -0.3 4,160,234 + +1.0 4,160,235 - +0.2 4,160,235 - +0.3 4,160,235 - -1.0 4,160,235 - -1.9 4,160,235 - +0.4 4,160,235 - +0.1 4,160,235 - +1.6 4,160,240 + -1.7 4,160,241 - -0.2 4,160,241 - +1.6 4,160,268 + +1.0 4,160,269 - +0.0 4,160,288 + -0.2 4,160,288 + +0.2 4,160,288 + +0.6 4,160,288 + -1.4 4,160,288 + -0.2 4,160,289 - +0.0 4,160,309 + AO356_18480 0.11 -0.7 4,160,310 - AO356_18480 0.12 +0.7 4,160,328 + AO356_18480 0.16 -0.8 4,160,699 + +0.0 4,160,699 + +0.7 4,160,700 - -0.2 4,160,726 - -0.3 4,160,781 + +0.8 4,160,781 + +0.4 4,160,823 + AO356_18485 0.14 -1.2 4,161,072 + +1.3 4,161,072 + +1.4 4,161,073 - +0.1 4,161,073 - +0.2 4,161,073 - +0.1 4,161,073 - -0.7
Or see this region's nucleotide sequence