Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03820

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03805 and AO356_03810 are separated by 5 nucleotidesAO356_03810 and AO356_03815 are separated by 102 nucleotidesAO356_03815 and AO356_03820 are separated by 6 nucleotidesAO356_03820 and AO356_03825 overlap by 11 nucleotidesAO356_03825 and AO356_03830 are separated by 7 nucleotides AO356_03805: AO356_03805 - chemotaxis protein CheY, at 842,549 to 844,255 _03805 AO356_03810: AO356_03810 - anti-anti-sigma factor, at 844,261 to 844,566 _03810 AO356_03815: AO356_03815 - flagellar biogenesis protein, at 844,669 to 845,118 _03815 AO356_03820: AO356_03820 - flagellar protein export ATPase FliI, at 845,125 to 846,483 _03820 AO356_03825: AO356_03825 - flagellar assembly protein FliH, at 846,473 to 847,318 _03825 AO356_03830: AO356_03830 - flagellar motor switch protein FliG, at 847,326 to 848,345 _03830 Position (kb) 845 846 847Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 844.409 kb on + strand, within AO356_03810at 844.410 kb on - strand, within AO356_03810at 844.466 kb on + strand, within AO356_03810at 844.466 kb on + strand, within AO356_03810at 844.466 kb on + strand, within AO356_03810at 844.466 kb on + strand, within AO356_03810at 844.466 kb on + strand, within AO356_03810at 844.467 kb on - strand, within AO356_03810at 844.467 kb on - strand, within AO356_03810at 844.467 kb on - strand, within AO356_03810at 844.467 kb on - strand, within AO356_03810at 844.547 kb on - strandat 844.547 kb on - strandat 844.590 kb on + strandat 844.590 kb on + strandat 844.590 kb on + strandat 844.590 kb on + strandat 844.590 kb on + strandat 844.590 kb on + strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.596 kb on + strandat 844.596 kb on + strandat 844.597 kb on - strandat 844.597 kb on - strandat 844.605 kb on + strandat 844.605 kb on + strandat 844.605 kb on + strandat 844.640 kb on - strandat 844.640 kb on - strandat 844.647 kb on - strandat 844.673 kb on + strandat 844.674 kb on - strandat 844.758 kb on + strand, within AO356_03815at 844.759 kb on - strand, within AO356_03815at 844.760 kb on + strand, within AO356_03815at 844.761 kb on - strand, within AO356_03815at 844.761 kb on - strand, within AO356_03815at 844.761 kb on - strand, within AO356_03815at 844.761 kb on - strand, within AO356_03815at 844.967 kb on + strand, within AO356_03815at 844.967 kb on + strand, within AO356_03815at 844.967 kb on + strand, within AO356_03815at 844.968 kb on - strand, within AO356_03815at 845.033 kb on + strand, within AO356_03815at 845.033 kb on + strand, within AO356_03815at 845.034 kb on - strand, within AO356_03815at 845.034 kb on - strand, within AO356_03815at 845.126 kb on + strandat 845.126 kb on + strandat 845.126 kb on + strandat 845.126 kb on + strandat 845.213 kb on + strandat 845.214 kb on - strandat 845.276 kb on + strand, within AO356_03820at 845.276 kb on + strand, within AO356_03820at 845.276 kb on + strand, within AO356_03820at 845.276 kb on + strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.325 kb on - strand, within AO356_03820at 845.528 kb on + strand, within AO356_03820at 845.528 kb on + strand, within AO356_03820at 845.528 kb on + strand, within AO356_03820at 845.528 kb on + strand, within AO356_03820at 845.528 kb on + strand, within AO356_03820at 845.529 kb on - strand, within AO356_03820at 845.529 kb on - strand, within AO356_03820at 845.529 kb on - strand, within AO356_03820at 845.730 kb on - strand, within AO356_03820at 845.750 kb on + strand, within AO356_03820at 845.750 kb on + strand, within AO356_03820at 845.750 kb on + strand, within AO356_03820at 845.750 kb on + strand, within AO356_03820at 845.750 kb on + strand, within AO356_03820at 845.750 kb on + strand, within AO356_03820at 845.750 kb on + strand, within AO356_03820at 845.751 kb on - strand, within AO356_03820at 845.751 kb on - strand, within AO356_03820at 845.751 kb on - strand, within AO356_03820at 845.751 kb on - strand, within AO356_03820at 845.751 kb on - strand, within AO356_03820at 845.751 kb on - strand, within AO356_03820at 845.751 kb on - strand, within AO356_03820at 845.751 kb on - strand, within AO356_03820at 845.751 kb on - strand, within AO356_03820at 845.751 kb on - strand, within AO356_03820at 845.751 kb on - strand, within AO356_03820at 845.751 kb on - strand, within AO356_03820at 845.751 kb on - strand, within AO356_03820at 845.751 kb on - strand, within AO356_03820at 845.751 kb on - strand, within AO356_03820at 845.803 kb on + strand, within AO356_03820at 845.943 kb on + strand, within AO356_03820at 845.944 kb on - strand, within AO356_03820at 845.944 kb on - strand, within AO356_03820at 845.998 kb on + strand, within AO356_03820at 845.999 kb on - strand, within AO356_03820at 846.305 kb on + strandat 846.306 kb on - strand, within AO356_03820at 846.306 kb on - strand, within AO356_03820at 846.440 kb on + strandat 846.440 kb on + strandat 846.441 kb on - strandat 846.807 kb on + strand, within AO356_03825at 846.808 kb on - strand, within AO356_03825at 846.808 kb on - strand, within AO356_03825at 846.808 kb on - strand, within AO356_03825at 846.808 kb on - strand, within AO356_03825at 846.820 kb on + strand, within AO356_03825at 847.107 kb on + strand, within AO356_03825at 847.107 kb on + strand, within AO356_03825at 847.107 kb on + strand, within AO356_03825at 847.318 kb on + strandat 847.318 kb on + strandat 847.318 kb on + strandat 847.318 kb on + strandat 847.318 kb on + strandat 847.318 kb on + strandat 847.319 kb on - strandat 847.327 kb on + strandat 847.327 kb on + strandat 847.327 kb on + strandat 847.327 kb on + strandat 847.327 kb on + strandat 847.327 kb on + strandat 847.327 kb on + strandat 847.327 kb on + strandat 847.327 kb on + strandat 847.327 kb on + strandat 847.327 kb on + strandat 847.327 kb on + strandat 847.328 kb on - strandat 847.328 kb on - strandat 847.328 kb on - strandat 847.328 kb on - strandat 847.328 kb on - strandat 847.328 kb on - strandat 847.328 kb on - strandat 847.328 kb on - strandat 847.328 kb on - strandat 847.328 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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844,409 + AO356_03810 0.48 +0.5
844,410 - AO356_03810 0.49 -1.0
844,466 + AO356_03810 0.67 -1.7
844,466 + AO356_03810 0.67 -1.5
844,466 + AO356_03810 0.67 -0.3
844,466 + AO356_03810 0.67 -1.4
844,466 + AO356_03810 0.67 -1.9
844,467 - AO356_03810 0.67 -1.4
844,467 - AO356_03810 0.67 -3.0
844,467 - AO356_03810 0.67 -0.0
844,467 - AO356_03810 0.67 -1.2
844,547 - -1.1
844,547 - -0.6
844,590 + -2.0
844,590 + -0.6
844,590 + -1.9
844,590 + -1.9
844,590 + -1.1
844,590 + -2.1
844,591 - -0.9
844,591 - +0.2
844,591 - -0.1
844,591 - -1.9
844,591 - -0.1
844,591 - -1.0
844,591 - -0.9
844,591 - -1.6
844,591 - +0.7
844,591 - +0.2
844,591 - -0.1
844,591 - +0.8
844,596 + -2.8
844,596 + -1.7
844,597 - -0.2
844,597 - +0.5
844,605 + -2.8
844,605 + -2.3
844,605 + -0.3
844,640 - -1.7
844,640 - +1.2
844,647 - -0.5
844,673 + +0.6
844,674 - -0.5
844,758 + AO356_03815 0.20 -0.0
844,759 - AO356_03815 0.20 -0.9
844,760 + AO356_03815 0.20 -0.1
844,761 - AO356_03815 0.20 +1.6
844,761 - AO356_03815 0.20 -0.5
844,761 - AO356_03815 0.20 +0.5
844,761 - AO356_03815 0.20 +0.6
844,967 + AO356_03815 0.66 +0.7
844,967 + AO356_03815 0.66 +1.2
844,967 + AO356_03815 0.66 +1.2
844,968 - AO356_03815 0.66 +0.1
845,033 + AO356_03815 0.81 +0.2
845,033 + AO356_03815 0.81 -0.8
845,034 - AO356_03815 0.81 -0.1
845,034 - AO356_03815 0.81 +1.2
845,126 + +1.0
845,126 + +1.9
845,126 + +1.2
845,126 + +0.3
845,213 + +0.9
845,214 - +0.8
845,276 + AO356_03820 0.11 +0.2
845,276 + AO356_03820 0.11 -0.3
845,276 + AO356_03820 0.11 +0.7
845,276 + AO356_03820 0.11 +0.3
845,277 - AO356_03820 0.11 -1.2
845,277 - AO356_03820 0.11 +0.3
845,277 - AO356_03820 0.11 +1.0
845,277 - AO356_03820 0.11 +0.8
845,277 - AO356_03820 0.11 +1.2
845,277 - AO356_03820 0.11 -0.4
845,277 - AO356_03820 0.11 +0.0
845,277 - AO356_03820 0.11 +2.2
845,277 - AO356_03820 0.11 +0.2
845,277 - AO356_03820 0.11 +1.2
845,277 - AO356_03820 0.11 +0.2
845,277 - AO356_03820 0.11 +0.8
845,325 - AO356_03820 0.15 +0.9
845,528 + AO356_03820 0.30 +1.3
845,528 + AO356_03820 0.30 +0.9
845,528 + AO356_03820 0.30 +0.4
845,528 + AO356_03820 0.30 +1.2
845,528 + AO356_03820 0.30 +0.1
845,529 - AO356_03820 0.30 +0.9
845,529 - AO356_03820 0.30 +0.6
845,529 - AO356_03820 0.30 +0.3
845,730 - AO356_03820 0.45 +0.9
845,750 + AO356_03820 0.46 +0.9
845,750 + AO356_03820 0.46 +0.4
845,750 + AO356_03820 0.46 +2.6
845,750 + AO356_03820 0.46 +0.9
845,750 + AO356_03820 0.46 -0.4
845,750 + AO356_03820 0.46 +0.3
845,750 + AO356_03820 0.46 +0.1
845,751 - AO356_03820 0.46 -0.1
845,751 - AO356_03820 0.46 +0.5
845,751 - AO356_03820 0.46 +1.1
845,751 - AO356_03820 0.46 -2.1
845,751 - AO356_03820 0.46 +0.2
845,751 - AO356_03820 0.46 -0.3
845,751 - AO356_03820 0.46 -2.2
845,751 - AO356_03820 0.46 +1.2
845,751 - AO356_03820 0.46 +0.4
845,751 - AO356_03820 0.46 +1.0
845,751 - AO356_03820 0.46 +1.0
845,751 - AO356_03820 0.46 +0.6
845,751 - AO356_03820 0.46 +0.2
845,751 - AO356_03820 0.46 +0.6
845,751 - AO356_03820 0.46 +1.0
845,803 + AO356_03820 0.50 +0.1
845,943 + AO356_03820 0.60 +1.4
845,944 - AO356_03820 0.60 +0.5
845,944 - AO356_03820 0.60 +0.7
845,998 + AO356_03820 0.64 +0.1
845,999 - AO356_03820 0.64 +0.2
846,305 + +0.5
846,306 - AO356_03820 0.87 +0.4
846,306 - AO356_03820 0.87 +0.6
846,440 + -0.6
846,440 + -0.1
846,441 - -0.2
846,807 + AO356_03825 0.39 +0.5
846,808 - AO356_03825 0.40 +0.4
846,808 - AO356_03825 0.40 +1.3
846,808 - AO356_03825 0.40 -0.7
846,808 - AO356_03825 0.40 +0.3
846,820 + AO356_03825 0.41 +0.2
847,107 + AO356_03825 0.75 +1.0
847,107 + AO356_03825 0.75 +1.3
847,107 + AO356_03825 0.75 +0.1
847,318 + +0.3
847,318 + +0.2
847,318 + +0.6
847,318 + +0.4
847,318 + -0.9
847,318 + -0.8
847,319 - +1.4
847,327 + +1.0
847,327 + +0.4
847,327 + +0.7
847,327 + +1.4
847,327 + +0.7
847,327 + +0.2
847,327 + -1.5
847,327 + +1.3
847,327 + +0.4
847,327 + -0.0
847,327 + +0.1
847,327 + +2.2
847,328 - +0.3
847,328 - +0.7
847,328 - +0.7
847,328 - -0.2
847,328 - -0.1
847,328 - -0.4
847,328 - +1.2
847,328 - +0.3
847,328 - +1.0
847,328 - +0.7

Or see this region's nucleotide sequence