Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03050 and AO356_03055 are separated by 116 nucleotides AO356_03055 and AO356_03060 are separated by 0 nucleotides AO356_03060 and AO356_03065 overlap by 4 nucleotides
AO356_03050: AO356_03050 - histidine kinase, at 678,323 to 681,943
_03050
AO356_03055: AO356_03055 - hypothetical protein, at 682,060 to 685,008
_03055
AO356_03060: AO356_03060 - GAF domain-containing protein, at 685,009 to 685,491
_03060
AO356_03065: AO356_03065 - AAA family ATPase, at 685,488 to 686,378
_03065
Position (kb) 682
683
684
685
686 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 681.285 kb on - strand, within AO356_03050 at 681.285 kb on - strand, within AO356_03050 at 681.675 kb on + strand at 681.675 kb on + strand at 681.675 kb on + strand at 681.675 kb on + strand at 681.765 kb on + strand at 681.765 kb on + strand at 681.765 kb on + strand at 681.765 kb on + strand at 681.766 kb on - strand at 681.766 kb on - strand at 681.941 kb on + strand at 681.953 kb on + strand at 681.953 kb on + strand at 681.953 kb on + strand at 681.953 kb on + strand at 681.954 kb on - strand at 681.954 kb on - strand at 681.956 kb on + strand at 681.956 kb on + strand at 681.956 kb on + strand at 681.956 kb on + strand at 681.956 kb on + strand at 681.956 kb on + strand at 681.956 kb on + strand at 681.956 kb on + strand at 681.956 kb on + strand at 681.957 kb on - strand at 681.957 kb on - strand at 681.957 kb on - strand at 681.957 kb on - strand at 681.957 kb on - strand at 681.957 kb on - strand at 681.961 kb on + strand at 681.961 kb on + strand at 681.961 kb on + strand at 681.961 kb on + strand at 681.961 kb on + strand at 681.962 kb on - strand at 681.962 kb on - strand at 681.962 kb on - strand at 681.979 kb on + strand at 681.979 kb on + strand at 682.125 kb on + strand at 682.126 kb on - strand at 682.162 kb on - strand at 682.252 kb on + strand at 682.252 kb on + strand at 682.252 kb on + strand at 682.252 kb on + strand at 682.252 kb on + strand at 682.252 kb on + strand at 682.252 kb on + strand at 682.252 kb on + strand at 682.252 kb on + strand at 682.252 kb on + strand at 682.252 kb on + strand at 682.252 kb on + strand at 682.253 kb on - strand at 682.253 kb on - strand at 682.253 kb on - strand at 682.253 kb on - strand at 682.253 kb on - strand at 682.253 kb on - strand at 682.253 kb on - strand at 682.253 kb on - strand at 682.261 kb on + strand at 682.261 kb on + strand at 682.261 kb on + strand at 682.262 kb on - strand at 682.262 kb on - strand at 682.262 kb on - strand at 682.396 kb on + strand, within AO356_03055 at 682.397 kb on - strand, within AO356_03055 at 682.397 kb on - strand, within AO356_03055 at 682.397 kb on - strand, within AO356_03055 at 682.397 kb on - strand, within AO356_03055 at 682.489 kb on + strand, within AO356_03055 at 682.552 kb on + strand, within AO356_03055 at 682.603 kb on + strand, within AO356_03055 at 682.603 kb on + strand, within AO356_03055 at 682.673 kb on - strand, within AO356_03055 at 682.673 kb on - strand, within AO356_03055 at 682.693 kb on - strand, within AO356_03055 at 682.693 kb on - strand, within AO356_03055 at 682.950 kb on + strand, within AO356_03055 at 682.951 kb on - strand, within AO356_03055 at 682.951 kb on - strand, within AO356_03055 at 683.075 kb on - strand, within AO356_03055 at 683.221 kb on + strand, within AO356_03055 at 683.222 kb on - strand, within AO356_03055 at 683.222 kb on - strand, within AO356_03055 at 683.413 kb on + strand, within AO356_03055 at 683.413 kb on + strand, within AO356_03055 at 683.514 kb on - strand, within AO356_03055 at 683.514 kb on - strand, within AO356_03055 at 683.514 kb on - strand, within AO356_03055 at 683.514 kb on - strand, within AO356_03055 at 683.514 kb on - strand, within AO356_03055 at 683.514 kb on - strand, within AO356_03055 at 683.834 kb on + strand, within AO356_03055 at 683.834 kb on + strand, within AO356_03055 at 683.835 kb on - strand, within AO356_03055 at 683.887 kb on + strand, within AO356_03055 at 683.888 kb on - strand, within AO356_03055 at 684.058 kb on + strand, within AO356_03055 at 684.058 kb on + strand, within AO356_03055 at 684.058 kb on + strand, within AO356_03055 at 684.059 kb on - strand, within AO356_03055 at 684.059 kb on - strand, within AO356_03055 at 684.113 kb on + strand, within AO356_03055 at 684.113 kb on + strand, within AO356_03055 at 684.113 kb on + strand, within AO356_03055 at 684.113 kb on + strand, within AO356_03055 at 684.114 kb on - strand, within AO356_03055 at 684.131 kb on + strand, within AO356_03055 at 684.131 kb on + strand, within AO356_03055 at 684.132 kb on - strand, within AO356_03055 at 684.132 kb on - strand, within AO356_03055 at 684.157 kb on + strand, within AO356_03055 at 684.526 kb on + strand, within AO356_03055 at 684.526 kb on + strand, within AO356_03055 at 684.526 kb on + strand, within AO356_03055 at 684.526 kb on + strand, within AO356_03055 at 684.527 kb on - strand, within AO356_03055 at 684.544 kb on + strand, within AO356_03055 at 684.544 kb on + strand, within AO356_03055 at 684.545 kb on - strand, within AO356_03055 at 684.545 kb on - strand, within AO356_03055 at 684.589 kb on + strand, within AO356_03055 at 684.589 kb on + strand, within AO356_03055 at 684.589 kb on + strand, within AO356_03055 at 684.590 kb on - strand, within AO356_03055 at 684.590 kb on - strand, within AO356_03055 at 684.590 kb on - strand, within AO356_03055 at 684.590 kb on - strand, within AO356_03055 at 684.590 kb on - strand, within AO356_03055 at 684.590 kb on - strand, within AO356_03055 at 684.590 kb on - strand, within AO356_03055 at 684.808 kb on + strand at 684.808 kb on + strand at 684.808 kb on + strand at 684.808 kb on + strand at 684.809 kb on - strand at 684.916 kb on + strand at 684.916 kb on + strand at 684.916 kb on + strand at 685.034 kb on - strand at 685.075 kb on - strand, within AO356_03060 at 685.329 kb on - strand, within AO356_03060 at 685.329 kb on - strand, within AO356_03060 at 685.329 kb on - strand, within AO356_03060 at 685.540 kb on + strand at 685.697 kb on - strand, within AO356_03065 at 685.843 kb on + strand, within AO356_03065 at 685.843 kb on + strand, within AO356_03065 at 685.843 kb on + strand, within AO356_03065 at 685.843 kb on + strand, within AO356_03065 at 685.844 kb on - strand, within AO356_03065 at 685.844 kb on - strand, within AO356_03065 at 685.844 kb on - strand, within AO356_03065 at 685.844 kb on - strand, within AO356_03065
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 681,285 - AO356_03050 0.82 +1.7 681,285 - AO356_03050 0.82 -0.4 681,675 + -0.8 681,675 + +0.4 681,675 + -1.2 681,675 + +0.4 681,765 + -0.1 681,765 + +0.9 681,765 + -0.2 681,765 + -0.9 681,766 - +0.9 681,766 - -1.2 681,941 + -0.5 681,953 + +1.2 681,953 + -0.2 681,953 + -0.5 681,953 + +0.8 681,954 - +1.2 681,954 - +0.2 681,956 + -0.0 681,956 + +1.0 681,956 + -0.4 681,956 + -0.5 681,956 + -0.7 681,956 + -1.3 681,956 + +0.4 681,956 + +0.1 681,956 + -0.3 681,957 - -0.9 681,957 - -0.7 681,957 - +0.9 681,957 - +1.5 681,957 - -1.0 681,957 - +0.2 681,961 + -0.7 681,961 + -0.1 681,961 + -0.2 681,961 + -0.9 681,961 + -0.2 681,962 - -1.2 681,962 - +0.4 681,962 - -0.5 681,979 + -0.5 681,979 + -1.2 682,125 + +0.2 682,126 - +0.5 682,162 - -0.2 682,252 + +0.8 682,252 + +1.2 682,252 + +0.1 682,252 + +0.5 682,252 + +0.8 682,252 + +0.0 682,252 + -0.3 682,252 + +0.6 682,252 + +1.0 682,252 + -0.4 682,252 + +0.3 682,252 + +1.4 682,253 - +1.7 682,253 - +0.9 682,253 - -0.2 682,253 - -0.2 682,253 - -0.3 682,253 - +0.3 682,253 - -1.2 682,253 - +0.3 682,261 + +0.1 682,261 + +0.7 682,261 + -0.0 682,262 - +0.5 682,262 - +0.8 682,262 - -0.8 682,396 + AO356_03055 0.11 -0.2 682,397 - AO356_03055 0.11 -1.3 682,397 - AO356_03055 0.11 -0.2 682,397 - AO356_03055 0.11 -0.5 682,397 - AO356_03055 0.11 -1.1 682,489 + AO356_03055 0.15 -0.3 682,552 + AO356_03055 0.17 +0.9 682,603 + AO356_03055 0.18 +1.6 682,603 + AO356_03055 0.18 -0.0 682,673 - AO356_03055 0.21 +0.1 682,673 - AO356_03055 0.21 -0.4 682,693 - AO356_03055 0.21 -0.3 682,693 - AO356_03055 0.21 -0.2 682,950 + AO356_03055 0.30 +0.3 682,951 - AO356_03055 0.30 +0.1 682,951 - AO356_03055 0.30 -0.2 683,075 - AO356_03055 0.34 +0.6 683,221 + AO356_03055 0.39 -0.4 683,222 - AO356_03055 0.39 -0.3 683,222 - AO356_03055 0.39 -0.2 683,413 + AO356_03055 0.46 +0.4 683,413 + AO356_03055 0.46 -0.2 683,514 - AO356_03055 0.49 -1.0 683,514 - AO356_03055 0.49 -1.1 683,514 - AO356_03055 0.49 -0.9 683,514 - AO356_03055 0.49 +1.8 683,514 - AO356_03055 0.49 -0.8 683,514 - AO356_03055 0.49 -0.6 683,834 + AO356_03055 0.60 +1.0 683,834 + AO356_03055 0.60 +0.5 683,835 - AO356_03055 0.60 +0.9 683,887 + AO356_03055 0.62 +0.3 683,888 - AO356_03055 0.62 -0.3 684,058 + AO356_03055 0.68 -0.8 684,058 + AO356_03055 0.68 +0.3 684,058 + AO356_03055 0.68 +0.1 684,059 - AO356_03055 0.68 -0.8 684,059 - AO356_03055 0.68 +0.0 684,113 + AO356_03055 0.70 -0.5 684,113 + AO356_03055 0.70 +0.4 684,113 + AO356_03055 0.70 +1.1 684,113 + AO356_03055 0.70 +0.6 684,114 - AO356_03055 0.70 -0.4 684,131 + AO356_03055 0.70 +0.1 684,131 + AO356_03055 0.70 -1.2 684,132 - AO356_03055 0.70 -2.2 684,132 - AO356_03055 0.70 +0.8 684,157 + AO356_03055 0.71 -1.3 684,526 + AO356_03055 0.84 +0.5 684,526 + AO356_03055 0.84 +0.6 684,526 + AO356_03055 0.84 +0.4 684,526 + AO356_03055 0.84 +1.1 684,527 - AO356_03055 0.84 +0.1 684,544 + AO356_03055 0.84 +1.8 684,544 + AO356_03055 0.84 +0.2 684,545 - AO356_03055 0.84 +1.0 684,545 - AO356_03055 0.84 -0.1 684,589 + AO356_03055 0.86 +0.0 684,589 + AO356_03055 0.86 -0.4 684,589 + AO356_03055 0.86 +0.9 684,590 - AO356_03055 0.86 -0.1 684,590 - AO356_03055 0.86 +1.0 684,590 - AO356_03055 0.86 +1.3 684,590 - AO356_03055 0.86 -0.4 684,590 - AO356_03055 0.86 +0.5 684,590 - AO356_03055 0.86 -3.0 684,590 - AO356_03055 0.86 -0.3 684,808 + +0.1 684,808 + -0.2 684,808 + -0.4 684,808 + +0.8 684,809 - -0.3 684,916 + -0.2 684,916 + +0.1 684,916 + +0.4 685,034 - +0.3 685,075 - AO356_03060 0.14 -0.3 685,329 - AO356_03060 0.66 -0.9 685,329 - AO356_03060 0.66 +0.3 685,329 - AO356_03060 0.66 +0.7 685,540 + +1.0 685,697 - AO356_03065 0.23 -0.4 685,843 + AO356_03065 0.40 -0.8 685,843 + AO356_03065 0.40 -1.2 685,843 + AO356_03065 0.40 +0.7 685,843 + AO356_03065 0.40 -1.0 685,844 - AO356_03065 0.40 -0.0 685,844 - AO356_03065 0.40 -0.7 685,844 - AO356_03065 0.40 +0.7 685,844 - AO356_03065 0.40 -0.2
Or see this region's nucleotide sequence