Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00650

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00645 and AO356_00650 are separated by 54 nucleotidesAO356_00650 and AO356_00655 are separated by 35 nucleotides AO356_00645: AO356_00645 - phenol degradation protein meta, at 137,815 to 138,807 _00645 AO356_00650: AO356_00650 - MFS transporter, at 138,862 to 140,043 _00650 AO356_00655: AO356_00655 - dioxygenase, at 140,079 to 141,527 _00655 Position (kb) 138 139 140 141Strain fitness (log2 ratio) -2 -1 0 1at 137.990 kb on - strand, within AO356_00645at 138.097 kb on + strand, within AO356_00645at 138.097 kb on + strand, within AO356_00645at 138.098 kb on - strand, within AO356_00645at 138.098 kb on - strand, within AO356_00645at 138.100 kb on + strand, within AO356_00645at 138.100 kb on + strand, within AO356_00645at 138.100 kb on + strand, within AO356_00645at 138.100 kb on + strand, within AO356_00645at 138.101 kb on - strand, within AO356_00645at 138.101 kb on - strand, within AO356_00645at 138.101 kb on - strandat 138.213 kb on + strand, within AO356_00645at 138.445 kb on + strand, within AO356_00645at 138.446 kb on - strand, within AO356_00645at 138.446 kb on - strand, within AO356_00645at 138.446 kb on - strand, within AO356_00645at 138.452 kb on - strand, within AO356_00645at 138.452 kb on - strand, within AO356_00645at 138.605 kb on - strand, within AO356_00645at 138.605 kb on - strand, within AO356_00645at 138.605 kb on - strand, within AO356_00645at 138.605 kb on - strand, within AO356_00645at 138.733 kb on + strandat 138.733 kb on + strandat 138.734 kb on - strandat 138.734 kb on - strandat 138.816 kb on + strandat 138.829 kb on + strandat 138.829 kb on + strandat 138.830 kb on - strandat 138.830 kb on - strandat 139.011 kb on + strand, within AO356_00650at 139.222 kb on + strand, within AO356_00650at 139.717 kb on + strand, within AO356_00650at 139.717 kb on + strand, within AO356_00650at 139.718 kb on - strand, within AO356_00650at 139.764 kb on + strand, within AO356_00650at 139.765 kb on - strand, within AO356_00650at 139.765 kb on - strand, within AO356_00650at 139.765 kb on - strand, within AO356_00650at 139.948 kb on + strandat 139.948 kb on + strandat 139.948 kb on + strandat 139.979 kb on + strandat 139.979 kb on + strandat 139.980 kb on - strandat 140.085 kb on - strandat 140.124 kb on + strandat 140.205 kb on + strandat 140.625 kb on + strand, within AO356_00655at 140.646 kb on - strand, within AO356_00655at 140.662 kb on - strand, within AO356_00655at 140.757 kb on + strand, within AO356_00655at 140.930 kb on + strand, within AO356_00655at 140.930 kb on + strand, within AO356_00655at 140.930 kb on + strand, within AO356_00655at 140.930 kb on + strand, within AO356_00655at 140.931 kb on - strand, within AO356_00655at 140.931 kb on - strand, within AO356_00655at 140.931 kb on - strand, within AO356_00655at 140.964 kb on + strand, within AO356_00655at 140.964 kb on + strand, within AO356_00655at 140.965 kb on - strand, within AO356_00655at 140.965 kb on - strand, within AO356_00655at 140.994 kb on - strand, within AO356_00655at 141.001 kb on - strand, within AO356_00655at 141.024 kb on + strand, within AO356_00655at 141.024 kb on + strand, within AO356_00655at 141.028 kb on + strand, within AO356_00655at 141.029 kb on - strand, within AO356_00655

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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137,990 - AO356_00645 0.18 -1.1
138,097 + AO356_00645 0.28 -0.4
138,097 + AO356_00645 0.28 -0.4
138,098 - AO356_00645 0.28 -0.0
138,098 - AO356_00645 0.28 -0.6
138,100 + AO356_00645 0.29 -0.1
138,100 + AO356_00645 0.29 +1.1
138,100 + AO356_00645 0.29 +0.1
138,100 + AO356_00645 0.29 +0.2
138,101 - AO356_00645 0.29 -1.5
138,101 - AO356_00645 0.29 +0.7
138,101 - +0.2
138,213 + AO356_00645 0.40 +0.0
138,445 + AO356_00645 0.63 -0.1
138,446 - AO356_00645 0.64 +0.4
138,446 - AO356_00645 0.64 +0.3
138,446 - AO356_00645 0.64 -0.0
138,452 - AO356_00645 0.64 -0.0
138,452 - AO356_00645 0.64 +0.6
138,605 - AO356_00645 0.80 -0.8
138,605 - AO356_00645 0.80 +0.4
138,605 - AO356_00645 0.80 -0.6
138,605 - AO356_00645 0.80 +0.5
138,733 + -0.1
138,733 + +0.8
138,734 - +0.8
138,734 - -0.5
138,816 + -0.4
138,829 + -0.0
138,829 + -0.6
138,830 - +0.9
138,830 - +1.5
139,011 + AO356_00650 0.13 +0.1
139,222 + AO356_00650 0.30 -0.6
139,717 + AO356_00650 0.72 +1.0
139,717 + AO356_00650 0.72 -0.8
139,718 - AO356_00650 0.72 +0.5
139,764 + AO356_00650 0.76 +0.3
139,765 - AO356_00650 0.76 -0.6
139,765 - AO356_00650 0.76 +0.7
139,765 - AO356_00650 0.76 +1.2
139,948 + +1.1
139,948 + +0.7
139,948 + -0.3
139,979 + +0.2
139,979 + +1.3
139,980 - +0.2
140,085 - -0.2
140,124 + +1.2
140,205 + +0.0
140,625 + AO356_00655 0.38 -0.2
140,646 - AO356_00655 0.39 +0.5
140,662 - AO356_00655 0.40 +1.2
140,757 + AO356_00655 0.47 +0.4
140,930 + AO356_00655 0.59 +0.6
140,930 + AO356_00655 0.59 -0.6
140,930 + AO356_00655 0.59 -0.2
140,930 + AO356_00655 0.59 +1.6
140,931 - AO356_00655 0.59 -0.2
140,931 - AO356_00655 0.59 +0.3
140,931 - AO356_00655 0.59 -0.4
140,964 + AO356_00655 0.61 +1.4
140,964 + AO356_00655 0.61 +0.6
140,965 - AO356_00655 0.61 +0.9
140,965 - AO356_00655 0.61 -1.9
140,994 - AO356_00655 0.63 +0.2
141,001 - AO356_00655 0.64 -1.1
141,024 + AO356_00655 0.65 +0.0
141,024 + AO356_00655 0.65 -1.1
141,028 + AO356_00655 0.65 +0.5
141,029 - AO356_00655 0.66 +0.8

Or see this region's nucleotide sequence