Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36320

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36310 and RR42_RS36315 are separated by 215 nucleotidesRR42_RS36315 and RR42_RS36320 are separated by 85 nucleotidesRR42_RS36320 and RR42_RS36325 are separated by 179 nucleotidesRR42_RS36325 and RR42_RS36330 are separated by 12 nucleotides RR42_RS36310: RR42_RS36310 - ABC transporter substrate-binding protein, at 3,599,266 to 3,600,264 _RS36310 RR42_RS36315: RR42_RS36315 - fructose 2,6-bisphosphatase, at 3,600,480 to 3,601,166 _RS36315 RR42_RS36320: RR42_RS36320 - acetyl-CoA acetyltransferase, at 3,601,252 to 3,602,430 _RS36320 RR42_RS36325: RR42_RS36325 - esterase, at 3,602,610 to 3,603,074 _RS36325 RR42_RS36330: RR42_RS36330 - nitronate monooxygenase, at 3,603,087 to 3,604,061 _RS36330 Position (kb) 3601 3602 3603Strain fitness (log2 ratio) -3 -2 -1 0 1at 3600.262 kb on + strandat 3600.263 kb on - strandat 3600.273 kb on + strandat 3600.285 kb on - strandat 3600.361 kb on + strandat 3600.388 kb on + strandat 3600.534 kb on + strandat 3600.535 kb on - strandat 3600.535 kb on - strandat 3600.735 kb on + strand, within RR42_RS36315at 3600.736 kb on - strand, within RR42_RS36315at 3600.814 kb on - strand, within RR42_RS36315at 3600.993 kb on - strand, within RR42_RS36315at 3601.073 kb on + strand, within RR42_RS36315at 3601.110 kb on - strandat 3601.110 kb on - strandat 3601.154 kb on + strandat 3601.154 kb on + strandat 3601.154 kb on + strandat 3601.245 kb on + strandat 3601.246 kb on - strandat 3601.246 kb on - strandat 3601.246 kb on - strandat 3601.270 kb on - strandat 3601.599 kb on + strand, within RR42_RS36320at 3601.599 kb on + strand, within RR42_RS36320at 3601.599 kb on + strand, within RR42_RS36320at 3601.599 kb on + strand, within RR42_RS36320at 3601.599 kb on + strand, within RR42_RS36320at 3601.599 kb on + strand, within RR42_RS36320at 3601.600 kb on - strand, within RR42_RS36320at 3601.600 kb on - strand, within RR42_RS36320at 3601.600 kb on - strand, within RR42_RS36320at 3601.788 kb on + strand, within RR42_RS36320at 3601.789 kb on - strand, within RR42_RS36320at 3602.417 kb on + strandat 3602.417 kb on + strandat 3602.418 kb on - strandat 3602.418 kb on - strandat 3602.418 kb on - strandat 3602.418 kb on - strandat 3602.944 kb on + strand, within RR42_RS36325at 3602.944 kb on + strand, within RR42_RS36325at 3602.945 kb on - strand, within RR42_RS36325at 3603.089 kb on - strandat 3603.256 kb on - strand, within RR42_RS36330at 3603.256 kb on - strand, within RR42_RS36330

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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3,600,262 + -0.4
3,600,263 - -2.8
3,600,273 + -0.8
3,600,285 - -0.9
3,600,361 + -0.0
3,600,388 + -0.7
3,600,534 + +0.3
3,600,535 - -1.5
3,600,535 - -1.4
3,600,735 + RR42_RS36315 0.37 +0.4
3,600,736 - RR42_RS36315 0.37 -0.9
3,600,814 - RR42_RS36315 0.49 +0.8
3,600,993 - RR42_RS36315 0.75 -0.1
3,601,073 + RR42_RS36315 0.86 -0.2
3,601,110 - +0.6
3,601,110 - +0.2
3,601,154 + -0.7
3,601,154 + +1.1
3,601,154 + -0.3
3,601,245 + -0.3
3,601,246 - +0.3
3,601,246 - +0.1
3,601,246 - -0.3
3,601,270 - -0.3
3,601,599 + RR42_RS36320 0.29 -2.0
3,601,599 + RR42_RS36320 0.29 -0.4
3,601,599 + RR42_RS36320 0.29 -1.5
3,601,599 + RR42_RS36320 0.29 -0.6
3,601,599 + RR42_RS36320 0.29 -0.5
3,601,599 + RR42_RS36320 0.29 +0.3
3,601,600 - RR42_RS36320 0.30 -1.7
3,601,600 - RR42_RS36320 0.30 +0.8
3,601,600 - RR42_RS36320 0.30 -0.9
3,601,788 + RR42_RS36320 0.45 +0.2
3,601,789 - RR42_RS36320 0.46 -0.0
3,602,417 + +0.1
3,602,417 + +0.7
3,602,418 - +1.3
3,602,418 - -0.4
3,602,418 - +0.2
3,602,418 - -0.0
3,602,944 + RR42_RS36325 0.72 +0.2
3,602,944 + RR42_RS36325 0.72 +0.7
3,602,945 - RR42_RS36325 0.72 -0.9
3,603,089 - -0.1
3,603,256 - RR42_RS36330 0.17 -0.3
3,603,256 - RR42_RS36330 0.17 -0.6

Or see this region's nucleotide sequence