Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS36310 and RR42_RS36315 are separated by 215 nucleotides RR42_RS36315 and RR42_RS36320 are separated by 85 nucleotides RR42_RS36320 and RR42_RS36325 are separated by 179 nucleotides RR42_RS36325 and RR42_RS36330 are separated by 12 nucleotides
RR42_RS36310: RR42_RS36310 - ABC transporter substrate-binding protein, at 3,599,266 to 3,600,264
_RS36310
RR42_RS36315: RR42_RS36315 - fructose 2,6-bisphosphatase, at 3,600,480 to 3,601,166
_RS36315
RR42_RS36320: RR42_RS36320 - acetyl-CoA acetyltransferase, at 3,601,252 to 3,602,430
_RS36320
RR42_RS36325: RR42_RS36325 - esterase, at 3,602,610 to 3,603,074
_RS36325
RR42_RS36330: RR42_RS36330 - nitronate monooxygenase, at 3,603,087 to 3,604,061
_RS36330
Position (kb)
3601
3602
3603 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3600.262 kb on + strand at 3600.263 kb on - strand at 3600.273 kb on + strand at 3600.285 kb on - strand at 3600.361 kb on + strand at 3600.388 kb on + strand at 3600.534 kb on + strand at 3600.535 kb on - strand at 3600.535 kb on - strand at 3600.735 kb on + strand, within RR42_RS36315 at 3600.736 kb on - strand, within RR42_RS36315 at 3600.814 kb on - strand, within RR42_RS36315 at 3600.993 kb on - strand, within RR42_RS36315 at 3601.073 kb on + strand, within RR42_RS36315 at 3601.110 kb on - strand at 3601.110 kb on - strand at 3601.154 kb on + strand at 3601.154 kb on + strand at 3601.154 kb on + strand at 3601.245 kb on + strand at 3601.246 kb on - strand at 3601.246 kb on - strand at 3601.246 kb on - strand at 3601.270 kb on - strand at 3601.599 kb on + strand, within RR42_RS36320 at 3601.599 kb on + strand, within RR42_RS36320 at 3601.599 kb on + strand, within RR42_RS36320 at 3601.599 kb on + strand, within RR42_RS36320 at 3601.599 kb on + strand, within RR42_RS36320 at 3601.599 kb on + strand, within RR42_RS36320 at 3601.600 kb on - strand, within RR42_RS36320 at 3601.600 kb on - strand, within RR42_RS36320 at 3601.600 kb on - strand, within RR42_RS36320 at 3601.788 kb on + strand, within RR42_RS36320 at 3601.789 kb on - strand, within RR42_RS36320 at 3602.417 kb on + strand at 3602.417 kb on + strand at 3602.418 kb on - strand at 3602.418 kb on - strand at 3602.418 kb on - strand at 3602.418 kb on - strand at 3602.944 kb on + strand, within RR42_RS36325 at 3602.944 kb on + strand, within RR42_RS36325 at 3602.945 kb on - strand, within RR42_RS36325 at 3603.089 kb on - strand at 3603.256 kb on - strand, within RR42_RS36330 at 3603.256 kb on - strand, within RR42_RS36330
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 3,600,262 + -0.4 3,600,263 - -2.8 3,600,273 + -0.8 3,600,285 - -0.9 3,600,361 + -0.0 3,600,388 + -0.7 3,600,534 + +0.3 3,600,535 - -1.5 3,600,535 - -1.4 3,600,735 + RR42_RS36315 0.37 +0.4 3,600,736 - RR42_RS36315 0.37 -0.9 3,600,814 - RR42_RS36315 0.49 +0.8 3,600,993 - RR42_RS36315 0.75 -0.1 3,601,073 + RR42_RS36315 0.86 -0.2 3,601,110 - +0.6 3,601,110 - +0.2 3,601,154 + -0.7 3,601,154 + +1.1 3,601,154 + -0.3 3,601,245 + -0.3 3,601,246 - +0.3 3,601,246 - +0.1 3,601,246 - -0.3 3,601,270 - -0.3 3,601,599 + RR42_RS36320 0.29 -2.0 3,601,599 + RR42_RS36320 0.29 -0.4 3,601,599 + RR42_RS36320 0.29 -1.5 3,601,599 + RR42_RS36320 0.29 -0.6 3,601,599 + RR42_RS36320 0.29 -0.5 3,601,599 + RR42_RS36320 0.29 +0.3 3,601,600 - RR42_RS36320 0.30 -1.7 3,601,600 - RR42_RS36320 0.30 +0.8 3,601,600 - RR42_RS36320 0.30 -0.9 3,601,788 + RR42_RS36320 0.45 +0.2 3,601,789 - RR42_RS36320 0.46 -0.0 3,602,417 + +0.1 3,602,417 + +0.7 3,602,418 - +1.3 3,602,418 - -0.4 3,602,418 - +0.2 3,602,418 - -0.0 3,602,944 + RR42_RS36325 0.72 +0.2 3,602,944 + RR42_RS36325 0.72 +0.7 3,602,945 - RR42_RS36325 0.72 -0.9 3,603,089 - -0.1 3,603,256 - RR42_RS36330 0.17 -0.3 3,603,256 - RR42_RS36330 0.17 -0.6
Or see this region's nucleotide sequence