Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS32910 and RR42_RS32915 are separated by 36 nucleotides RR42_RS32915 and RR42_RS32920 are separated by 52 nucleotides RR42_RS32920 and RR42_RS32925 are separated by 375 nucleotides
RR42_RS32910: RR42_RS32910 - LysR family transcriptional regulator, at 2,783,454 to 2,784,368
_RS32910
RR42_RS32915: RR42_RS32915 - GDP-mannose dehydrogenase, at 2,784,405 to 2,785,283
_RS32915
RR42_RS32920: RR42_RS32920 - maleylacetate reductase, at 2,785,336 to 2,786,403
_RS32920
RR42_RS32925: RR42_RS32925 - alpha/beta hydrolase, at 2,786,779 to 2,787,735
_RS32925
Position (kb)
2785
2786
2787 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2784.394 kb on - strand at 2784.463 kb on + strand at 2784.613 kb on + strand, within RR42_RS32915 at 2784.614 kb on - strand, within RR42_RS32915 at 2784.614 kb on - strand, within RR42_RS32915 at 2784.614 kb on - strand, within RR42_RS32915 at 2784.866 kb on - strand, within RR42_RS32915 at 2784.866 kb on - strand, within RR42_RS32915 at 2785.022 kb on + strand, within RR42_RS32915 at 2785.023 kb on - strand, within RR42_RS32915 at 2785.024 kb on + strand, within RR42_RS32915 at 2785.024 kb on + strand, within RR42_RS32915 at 2785.024 kb on + strand, within RR42_RS32915 at 2785.024 kb on + strand, within RR42_RS32915 at 2785.024 kb on + strand, within RR42_RS32915 at 2785.025 kb on - strand, within RR42_RS32915 at 2785.025 kb on - strand, within RR42_RS32915 at 2785.025 kb on - strand, within RR42_RS32915 at 2785.025 kb on - strand, within RR42_RS32915 at 2785.025 kb on - strand, within RR42_RS32915 at 2785.025 kb on - strand, within RR42_RS32915 at 2785.517 kb on + strand, within RR42_RS32920 at 2785.601 kb on + strand, within RR42_RS32920 at 2785.602 kb on - strand, within RR42_RS32920 at 2785.671 kb on + strand, within RR42_RS32920 at 2785.672 kb on - strand, within RR42_RS32920 at 2785.740 kb on - strand, within RR42_RS32920 at 2785.740 kb on - strand, within RR42_RS32920 at 2785.862 kb on + strand, within RR42_RS32920 at 2785.862 kb on + strand, within RR42_RS32920 at 2785.862 kb on + strand, within RR42_RS32920 at 2785.863 kb on - strand, within RR42_RS32920 at 2785.950 kb on - strand, within RR42_RS32920 at 2785.959 kb on + strand, within RR42_RS32920 at 2786.018 kb on + strand, within RR42_RS32920 at 2786.019 kb on - strand, within RR42_RS32920 at 2786.045 kb on + strand, within RR42_RS32920 at 2786.046 kb on - strand, within RR42_RS32920 at 2786.046 kb on - strand, within RR42_RS32920 at 2786.216 kb on + strand, within RR42_RS32920 at 2786.217 kb on - strand, within RR42_RS32920 at 2786.217 kb on - strand, within RR42_RS32920 at 2786.217 kb on - strand, within RR42_RS32920 at 2786.385 kb on - strand at 2786.468 kb on + strand at 2786.468 kb on + strand at 2786.468 kb on + strand at 2786.468 kb on + strand at 2786.653 kb on + strand at 2786.739 kb on + strand at 2786.739 kb on + strand at 2786.781 kb on - strand at 2786.781 kb on - strand at 2786.912 kb on - strand, within RR42_RS32925 at 2786.942 kb on - strand, within RR42_RS32925 at 2786.951 kb on - strand, within RR42_RS32925 at 2787.070 kb on + strand, within RR42_RS32925 at 2787.071 kb on - strand, within RR42_RS32925 at 2787.071 kb on - strand, within RR42_RS32925 at 2787.081 kb on + strand, within RR42_RS32925 at 2787.124 kb on + strand, within RR42_RS32925 at 2787.124 kb on + strand, within RR42_RS32925 at 2787.124 kb on + strand, within RR42_RS32925 at 2787.125 kb on - strand, within RR42_RS32925 at 2787.268 kb on + strand, within RR42_RS32925 at 2787.268 kb on + strand, within RR42_RS32925 at 2787.268 kb on + strand, within RR42_RS32925 at 2787.287 kb on - strand, within RR42_RS32925 at 2787.289 kb on - strand, within RR42_RS32925
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 2,784,394 - +0.7 2,784,463 + +0.2 2,784,613 + RR42_RS32915 0.24 -0.4 2,784,614 - RR42_RS32915 0.24 -0.7 2,784,614 - RR42_RS32915 0.24 -2.6 2,784,614 - RR42_RS32915 0.24 -0.0 2,784,866 - RR42_RS32915 0.52 +0.2 2,784,866 - RR42_RS32915 0.52 +0.3 2,785,022 + RR42_RS32915 0.70 -0.7 2,785,023 - RR42_RS32915 0.70 -0.5 2,785,024 + RR42_RS32915 0.70 -0.0 2,785,024 + RR42_RS32915 0.70 +1.4 2,785,024 + RR42_RS32915 0.70 +0.1 2,785,024 + RR42_RS32915 0.70 +1.1 2,785,024 + RR42_RS32915 0.70 +0.8 2,785,025 - RR42_RS32915 0.71 +0.1 2,785,025 - RR42_RS32915 0.71 -0.9 2,785,025 - RR42_RS32915 0.71 -0.2 2,785,025 - RR42_RS32915 0.71 +0.8 2,785,025 - RR42_RS32915 0.71 -0.2 2,785,025 - RR42_RS32915 0.71 -0.5 2,785,517 + RR42_RS32920 0.17 +0.5 2,785,601 + RR42_RS32920 0.25 +2.1 2,785,602 - RR42_RS32920 0.25 +0.8 2,785,671 + RR42_RS32920 0.31 -1.2 2,785,672 - RR42_RS32920 0.31 -0.2 2,785,740 - RR42_RS32920 0.38 -0.2 2,785,740 - RR42_RS32920 0.38 +1.1 2,785,862 + RR42_RS32920 0.49 +0.8 2,785,862 + RR42_RS32920 0.49 +1.1 2,785,862 + RR42_RS32920 0.49 -2.7 2,785,863 - RR42_RS32920 0.49 +2.0 2,785,950 - RR42_RS32920 0.57 -0.4 2,785,959 + RR42_RS32920 0.58 -2.5 2,786,018 + RR42_RS32920 0.64 +0.1 2,786,019 - RR42_RS32920 0.64 +0.1 2,786,045 + RR42_RS32920 0.66 +0.3 2,786,046 - RR42_RS32920 0.66 -0.2 2,786,046 - RR42_RS32920 0.66 -0.3 2,786,216 + RR42_RS32920 0.82 +0.8 2,786,217 - RR42_RS32920 0.82 -0.8 2,786,217 - RR42_RS32920 0.82 +1.4 2,786,217 - RR42_RS32920 0.82 +0.4 2,786,385 - -0.5 2,786,468 + +0.1 2,786,468 + +0.5 2,786,468 + -0.5 2,786,468 + +0.2 2,786,653 + +1.8 2,786,739 + -1.6 2,786,739 + -0.3 2,786,781 - -0.0 2,786,781 - -0.5 2,786,912 - RR42_RS32925 0.14 +1.3 2,786,942 - RR42_RS32925 0.17 -0.0 2,786,951 - RR42_RS32925 0.18 +0.0 2,787,070 + RR42_RS32925 0.30 -1.1 2,787,071 - RR42_RS32925 0.31 +0.1 2,787,071 - RR42_RS32925 0.31 -2.1 2,787,081 + RR42_RS32925 0.32 +1.0 2,787,124 + RR42_RS32925 0.36 -0.4 2,787,124 + RR42_RS32925 0.36 -0.3 2,787,124 + RR42_RS32925 0.36 +0.8 2,787,125 - RR42_RS32925 0.36 +0.2 2,787,268 + RR42_RS32925 0.51 +0.6 2,787,268 + RR42_RS32925 0.51 -0.8 2,787,268 + RR42_RS32925 0.51 -0.2 2,787,287 - RR42_RS32925 0.53 +1.1 2,787,289 - RR42_RS32925 0.53 +0.7
Or see this region's nucleotide sequence