Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32920

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS32910 and RR42_RS32915 are separated by 36 nucleotidesRR42_RS32915 and RR42_RS32920 are separated by 52 nucleotidesRR42_RS32920 and RR42_RS32925 are separated by 375 nucleotides RR42_RS32910: RR42_RS32910 - LysR family transcriptional regulator, at 2,783,454 to 2,784,368 _RS32910 RR42_RS32915: RR42_RS32915 - GDP-mannose dehydrogenase, at 2,784,405 to 2,785,283 _RS32915 RR42_RS32920: RR42_RS32920 - maleylacetate reductase, at 2,785,336 to 2,786,403 _RS32920 RR42_RS32925: RR42_RS32925 - alpha/beta hydrolase, at 2,786,779 to 2,787,735 _RS32925 Position (kb) 2785 2786 2787Strain fitness (log2 ratio) -2 -1 0 1 2at 2784.394 kb on - strandat 2784.463 kb on + strandat 2784.613 kb on + strand, within RR42_RS32915at 2784.614 kb on - strand, within RR42_RS32915at 2784.614 kb on - strand, within RR42_RS32915at 2784.614 kb on - strand, within RR42_RS32915at 2784.866 kb on - strand, within RR42_RS32915at 2784.866 kb on - strand, within RR42_RS32915at 2785.022 kb on + strand, within RR42_RS32915at 2785.023 kb on - strand, within RR42_RS32915at 2785.024 kb on + strand, within RR42_RS32915at 2785.024 kb on + strand, within RR42_RS32915at 2785.024 kb on + strand, within RR42_RS32915at 2785.024 kb on + strand, within RR42_RS32915at 2785.024 kb on + strand, within RR42_RS32915at 2785.025 kb on - strand, within RR42_RS32915at 2785.025 kb on - strand, within RR42_RS32915at 2785.025 kb on - strand, within RR42_RS32915at 2785.025 kb on - strand, within RR42_RS32915at 2785.025 kb on - strand, within RR42_RS32915at 2785.025 kb on - strand, within RR42_RS32915at 2785.517 kb on + strand, within RR42_RS32920at 2785.601 kb on + strand, within RR42_RS32920at 2785.602 kb on - strand, within RR42_RS32920at 2785.671 kb on + strand, within RR42_RS32920at 2785.672 kb on - strand, within RR42_RS32920at 2785.740 kb on - strand, within RR42_RS32920at 2785.740 kb on - strand, within RR42_RS32920at 2785.862 kb on + strand, within RR42_RS32920at 2785.862 kb on + strand, within RR42_RS32920at 2785.862 kb on + strand, within RR42_RS32920at 2785.863 kb on - strand, within RR42_RS32920at 2785.950 kb on - strand, within RR42_RS32920at 2785.959 kb on + strand, within RR42_RS32920at 2786.018 kb on + strand, within RR42_RS32920at 2786.019 kb on - strand, within RR42_RS32920at 2786.045 kb on + strand, within RR42_RS32920at 2786.046 kb on - strand, within RR42_RS32920at 2786.046 kb on - strand, within RR42_RS32920at 2786.216 kb on + strand, within RR42_RS32920at 2786.217 kb on - strand, within RR42_RS32920at 2786.217 kb on - strand, within RR42_RS32920at 2786.217 kb on - strand, within RR42_RS32920at 2786.385 kb on - strandat 2786.468 kb on + strandat 2786.468 kb on + strandat 2786.468 kb on + strandat 2786.468 kb on + strandat 2786.653 kb on + strandat 2786.739 kb on + strandat 2786.739 kb on + strandat 2786.781 kb on - strandat 2786.781 kb on - strandat 2786.912 kb on - strand, within RR42_RS32925at 2786.942 kb on - strand, within RR42_RS32925at 2786.951 kb on - strand, within RR42_RS32925at 2787.070 kb on + strand, within RR42_RS32925at 2787.071 kb on - strand, within RR42_RS32925at 2787.071 kb on - strand, within RR42_RS32925at 2787.081 kb on + strand, within RR42_RS32925at 2787.124 kb on + strand, within RR42_RS32925at 2787.124 kb on + strand, within RR42_RS32925at 2787.124 kb on + strand, within RR42_RS32925at 2787.125 kb on - strand, within RR42_RS32925at 2787.268 kb on + strand, within RR42_RS32925at 2787.268 kb on + strand, within RR42_RS32925at 2787.268 kb on + strand, within RR42_RS32925at 2787.287 kb on - strand, within RR42_RS32925at 2787.289 kb on - strand, within RR42_RS32925

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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2,784,394 - +0.7
2,784,463 + +0.2
2,784,613 + RR42_RS32915 0.24 -0.4
2,784,614 - RR42_RS32915 0.24 -0.7
2,784,614 - RR42_RS32915 0.24 -2.6
2,784,614 - RR42_RS32915 0.24 -0.0
2,784,866 - RR42_RS32915 0.52 +0.2
2,784,866 - RR42_RS32915 0.52 +0.3
2,785,022 + RR42_RS32915 0.70 -0.7
2,785,023 - RR42_RS32915 0.70 -0.5
2,785,024 + RR42_RS32915 0.70 -0.0
2,785,024 + RR42_RS32915 0.70 +1.4
2,785,024 + RR42_RS32915 0.70 +0.1
2,785,024 + RR42_RS32915 0.70 +1.1
2,785,024 + RR42_RS32915 0.70 +0.8
2,785,025 - RR42_RS32915 0.71 +0.1
2,785,025 - RR42_RS32915 0.71 -0.9
2,785,025 - RR42_RS32915 0.71 -0.2
2,785,025 - RR42_RS32915 0.71 +0.8
2,785,025 - RR42_RS32915 0.71 -0.2
2,785,025 - RR42_RS32915 0.71 -0.5
2,785,517 + RR42_RS32920 0.17 +0.5
2,785,601 + RR42_RS32920 0.25 +2.1
2,785,602 - RR42_RS32920 0.25 +0.8
2,785,671 + RR42_RS32920 0.31 -1.2
2,785,672 - RR42_RS32920 0.31 -0.2
2,785,740 - RR42_RS32920 0.38 -0.2
2,785,740 - RR42_RS32920 0.38 +1.1
2,785,862 + RR42_RS32920 0.49 +0.8
2,785,862 + RR42_RS32920 0.49 +1.1
2,785,862 + RR42_RS32920 0.49 -2.7
2,785,863 - RR42_RS32920 0.49 +2.0
2,785,950 - RR42_RS32920 0.57 -0.4
2,785,959 + RR42_RS32920 0.58 -2.5
2,786,018 + RR42_RS32920 0.64 +0.1
2,786,019 - RR42_RS32920 0.64 +0.1
2,786,045 + RR42_RS32920 0.66 +0.3
2,786,046 - RR42_RS32920 0.66 -0.2
2,786,046 - RR42_RS32920 0.66 -0.3
2,786,216 + RR42_RS32920 0.82 +0.8
2,786,217 - RR42_RS32920 0.82 -0.8
2,786,217 - RR42_RS32920 0.82 +1.4
2,786,217 - RR42_RS32920 0.82 +0.4
2,786,385 - -0.5
2,786,468 + +0.1
2,786,468 + +0.5
2,786,468 + -0.5
2,786,468 + +0.2
2,786,653 + +1.8
2,786,739 + -1.6
2,786,739 + -0.3
2,786,781 - -0.0
2,786,781 - -0.5
2,786,912 - RR42_RS32925 0.14 +1.3
2,786,942 - RR42_RS32925 0.17 -0.0
2,786,951 - RR42_RS32925 0.18 +0.0
2,787,070 + RR42_RS32925 0.30 -1.1
2,787,071 - RR42_RS32925 0.31 +0.1
2,787,071 - RR42_RS32925 0.31 -2.1
2,787,081 + RR42_RS32925 0.32 +1.0
2,787,124 + RR42_RS32925 0.36 -0.4
2,787,124 + RR42_RS32925 0.36 -0.3
2,787,124 + RR42_RS32925 0.36 +0.8
2,787,125 - RR42_RS32925 0.36 +0.2
2,787,268 + RR42_RS32925 0.51 +0.6
2,787,268 + RR42_RS32925 0.51 -0.8
2,787,268 + RR42_RS32925 0.51 -0.2
2,787,287 - RR42_RS32925 0.53 +1.1
2,787,289 - RR42_RS32925 0.53 +0.7

Or see this region's nucleotide sequence