Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31925

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS31920 and RR42_RS31925 are separated by 61 nucleotidesRR42_RS31925 and RR42_RS31930 are separated by 54 nucleotides RR42_RS31920: RR42_RS31920 - acetyl-CoA acetyltransferase, at 2,538,468 to 2,539,619 _RS31920 RR42_RS31925: RR42_RS31925 - acyl-CoA dehydrogenase, at 2,539,681 to 2,540,751 _RS31925 RR42_RS31930: RR42_RS31930 - acyl-CoA dehydrogenase, at 2,540,806 to 2,541,975 _RS31930 Position (kb) 2539 2540 2541Strain fitness (log2 ratio) -1 0 1at 2539.478 kb on - strand, within RR42_RS31920at 2539.605 kb on - strandat 2539.605 kb on - strandat 2539.606 kb on + strandat 2539.606 kb on + strandat 2539.606 kb on + strandat 2539.607 kb on - strandat 2539.607 kb on - strandat 2539.607 kb on - strandat 2539.607 kb on - strandat 2539.668 kb on + strandat 2540.874 kb on - strandat 2541.051 kb on + strand, within RR42_RS31930at 2541.086 kb on + strand, within RR42_RS31930at 2541.527 kb on + strand, within RR42_RS31930at 2541.528 kb on - strand, within RR42_RS31930at 2541.740 kb on + strand, within RR42_RS31930at 2541.741 kb on - strand, within RR42_RS31930at 2541.741 kb on - strand, within RR42_RS31930

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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2,539,478 - RR42_RS31920 0.88 -0.2
2,539,605 - -0.1
2,539,605 - -0.2
2,539,606 + -0.8
2,539,606 + +0.1
2,539,606 + -0.1
2,539,607 - +0.5
2,539,607 - -1.0
2,539,607 - -0.7
2,539,607 - -0.6
2,539,668 + -0.9
2,540,874 - +0.7
2,541,051 + RR42_RS31930 0.21 -1.7
2,541,086 + RR42_RS31930 0.24 -0.8
2,541,527 + RR42_RS31930 0.62 +0.2
2,541,528 - RR42_RS31930 0.62 +0.0
2,541,740 + RR42_RS31930 0.80 +0.0
2,541,741 - RR42_RS31930 0.80 -0.6
2,541,741 - RR42_RS31930 0.80 -0.1

Or see this region's nucleotide sequence