Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29425

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS29420 and RR42_RS29425 are separated by 85 nucleotidesRR42_RS29425 and RR42_RS29430 are separated by 138 nucleotides RR42_RS29420: RR42_RS29420 - 3-methylcrotonyl-CoA carboxylase, at 1,954,717 to 1,956,717 _RS29420 RR42_RS29425: RR42_RS29425 - enoyl-CoA hydratase, at 1,956,803 to 1,957,588 _RS29425 RR42_RS29430: RR42_RS29430 - acyl-CoA synthetase, at 1,957,727 to 1,959,232 _RS29430 Position (kb) 1956 1957 1958Strain fitness (log2 ratio) -2 -1 0 1 2at 1955.869 kb on + strand, within RR42_RS29420at 1955.869 kb on + strand, within RR42_RS29420at 1955.870 kb on - strand, within RR42_RS29420at 1956.089 kb on + strand, within RR42_RS29420at 1956.090 kb on - strand, within RR42_RS29420at 1956.127 kb on + strand, within RR42_RS29420at 1956.127 kb on + strand, within RR42_RS29420at 1956.127 kb on + strand, within RR42_RS29420at 1956.241 kb on + strand, within RR42_RS29420at 1956.242 kb on - strand, within RR42_RS29420at 1956.309 kb on - strand, within RR42_RS29420at 1956.787 kb on + strandat 1957.065 kb on - strand, within RR42_RS29425at 1957.065 kb on - strand, within RR42_RS29425at 1957.252 kb on - strand, within RR42_RS29425at 1957.252 kb on - strand, within RR42_RS29425at 1957.252 kb on - strand, within RR42_RS29425at 1957.439 kb on + strand, within RR42_RS29425at 1957.439 kb on + strand, within RR42_RS29425at 1957.440 kb on - strand, within RR42_RS29425at 1957.440 kb on - strand, within RR42_RS29425at 1957.440 kb on - strand, within RR42_RS29425at 1957.487 kb on + strand, within RR42_RS29425at 1957.489 kb on + strand, within RR42_RS29425at 1957.586 kb on + strandat 1957.587 kb on - strandat 1957.587 kb on - strandat 1957.660 kb on + strandat 1957.660 kb on + strandat 1957.805 kb on + strandat 1957.805 kb on + strandat 1957.806 kb on - strandat 1957.964 kb on - strand, within RR42_RS29430at 1958.020 kb on + strand, within RR42_RS29430at 1958.021 kb on - strand, within RR42_RS29430at 1958.043 kb on - strand, within RR42_RS29430at 1958.043 kb on - strand, within RR42_RS29430at 1958.204 kb on + strand, within RR42_RS29430at 1958.204 kb on + strand, within RR42_RS29430at 1958.204 kb on + strand, within RR42_RS29430at 1958.205 kb on - strand, within RR42_RS29430at 1958.205 kb on - strand, within RR42_RS29430at 1958.205 kb on - strand, within RR42_RS29430at 1958.205 kb on - strand, within RR42_RS29430

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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1,955,869 + RR42_RS29420 0.58 +1.9
1,955,869 + RR42_RS29420 0.58 -0.6
1,955,870 - RR42_RS29420 0.58 +0.2
1,956,089 + RR42_RS29420 0.69 -2.3
1,956,090 - RR42_RS29420 0.69 +0.0
1,956,127 + RR42_RS29420 0.70 +0.0
1,956,127 + RR42_RS29420 0.70 +2.4
1,956,127 + RR42_RS29420 0.70 -0.5
1,956,241 + RR42_RS29420 0.76 -0.5
1,956,242 - RR42_RS29420 0.76 -0.1
1,956,309 - RR42_RS29420 0.80 -0.4
1,956,787 + +0.5
1,957,065 - RR42_RS29425 0.33 -0.4
1,957,065 - RR42_RS29425 0.33 -1.0
1,957,252 - RR42_RS29425 0.57 -0.1
1,957,252 - RR42_RS29425 0.57 +0.6
1,957,252 - RR42_RS29425 0.57 +1.5
1,957,439 + RR42_RS29425 0.81 -0.4
1,957,439 + RR42_RS29425 0.81 +0.5
1,957,440 - RR42_RS29425 0.81 +0.5
1,957,440 - RR42_RS29425 0.81 +1.5
1,957,440 - RR42_RS29425 0.81 +1.0
1,957,487 + RR42_RS29425 0.87 +0.7
1,957,489 + RR42_RS29425 0.87 -1.1
1,957,586 + -0.7
1,957,587 - +1.7
1,957,587 - -1.5
1,957,660 + +0.1
1,957,660 + -0.0
1,957,805 + -0.7
1,957,805 + -0.5
1,957,806 - -0.6
1,957,964 - RR42_RS29430 0.16 +0.9
1,958,020 + RR42_RS29430 0.19 -0.2
1,958,021 - RR42_RS29430 0.20 +0.7
1,958,043 - RR42_RS29430 0.21 +0.9
1,958,043 - RR42_RS29430 0.21 +0.8
1,958,204 + RR42_RS29430 0.32 +1.1
1,958,204 + RR42_RS29430 0.32 +0.0
1,958,204 + RR42_RS29430 0.32 -0.5
1,958,205 - RR42_RS29430 0.32 -1.4
1,958,205 - RR42_RS29430 0.32 +0.4
1,958,205 - RR42_RS29430 0.32 +0.2
1,958,205 - RR42_RS29430 0.32 -0.1

Or see this region's nucleotide sequence