Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28650

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS28645 and RR42_RS28650 are separated by 8 nucleotidesRR42_RS28650 and RR42_RS28655 are separated by 326 nucleotides RR42_RS28645: RR42_RS28645 - S-formylglutathione hydrolase, at 1,782,011 to 1,782,862 _RS28645 RR42_RS28650: RR42_RS28650 - alcohol dehydrogenase, at 1,782,871 to 1,783,977 _RS28650 RR42_RS28655: RR42_RS28655 - IclR family transcriptional regulator, at 1,784,304 to 1,785,092 _RS28655 Position (kb) 1782 1783 1784Strain fitness (log2 ratio) -1 0 1 2at 1781.894 kb on + strandat 1781.894 kb on + strandat 1781.894 kb on + strandat 1781.894 kb on + strandat 1781.895 kb on - strandat 1781.895 kb on - strandat 1781.897 kb on + strandat 1781.897 kb on + strandat 1781.897 kb on + strandat 1781.898 kb on - strandat 1781.898 kb on - strandat 1781.898 kb on - strandat 1781.898 kb on - strandat 1781.898 kb on - strandat 1781.898 kb on - strandat 1782.066 kb on + strandat 1782.066 kb on + strandat 1782.067 kb on - strandat 1782.067 kb on - strandat 1782.252 kb on + strand, within RR42_RS28645at 1782.253 kb on - strand, within RR42_RS28645at 1782.253 kb on - strand, within RR42_RS28645at 1782.489 kb on + strand, within RR42_RS28645at 1782.490 kb on - strand, within RR42_RS28645at 1782.540 kb on + strand, within RR42_RS28645at 1782.541 kb on - strand, within RR42_RS28645at 1782.708 kb on + strand, within RR42_RS28645at 1782.709 kb on - strand, within RR42_RS28645at 1782.810 kb on + strandat 1782.857 kb on + strandat 1782.857 kb on + strandat 1782.857 kb on + strandat 1782.858 kb on - strandat 1782.876 kb on - strandat 1784.035 kb on + strandat 1784.035 kb on + strandat 1784.035 kb on + strandat 1784.036 kb on - strandat 1784.036 kb on - strandat 1784.090 kb on + strandat 1784.090 kb on + strandat 1784.090 kb on + strandat 1784.091 kb on - strandat 1784.091 kb on - strandat 1784.091 kb on - strandat 1784.091 kb on - strandat 1784.091 kb on - strandat 1784.092 kb on + strandat 1784.092 kb on + strandat 1784.092 kb on + strandat 1784.092 kb on + strandat 1784.093 kb on - strandat 1784.093 kb on - strandat 1784.093 kb on - strandat 1784.093 kb on - strandat 1784.093 kb on - strandat 1784.093 kb on - strandat 1784.212 kb on + strandat 1784.212 kb on + strandat 1784.283 kb on + strandat 1784.283 kb on + strandat 1784.530 kb on + strand, within RR42_RS28655at 1784.530 kb on + strand, within RR42_RS28655at 1784.531 kb on - strand, within RR42_RS28655at 1784.703 kb on + strand, within RR42_RS28655at 1784.703 kb on + strand, within RR42_RS28655at 1784.703 kb on + strand, within RR42_RS28655at 1784.703 kb on + strand, within RR42_RS28655at 1784.704 kb on - strand, within RR42_RS28655at 1784.704 kb on - strand, within RR42_RS28655at 1784.949 kb on + strand, within RR42_RS28655at 1784.949 kb on + strand, within RR42_RS28655at 1784.950 kb on - strand, within RR42_RS28655

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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1,781,894 + +0.4
1,781,894 + +0.4
1,781,894 + +0.5
1,781,894 + -0.2
1,781,895 - -0.3
1,781,895 - -0.0
1,781,897 + -0.5
1,781,897 + -1.0
1,781,897 + +0.5
1,781,898 - +0.1
1,781,898 - -0.9
1,781,898 - +0.4
1,781,898 - -0.6
1,781,898 - -0.1
1,781,898 - -0.3
1,782,066 + +0.5
1,782,066 + -0.4
1,782,067 - -0.2
1,782,067 - +1.7
1,782,252 + RR42_RS28645 0.28 -0.2
1,782,253 - RR42_RS28645 0.28 -1.0
1,782,253 - RR42_RS28645 0.28 +1.0
1,782,489 + RR42_RS28645 0.56 -0.5
1,782,490 - RR42_RS28645 0.56 +0.7
1,782,540 + RR42_RS28645 0.62 +0.1
1,782,541 - RR42_RS28645 0.62 +2.4
1,782,708 + RR42_RS28645 0.82 -0.3
1,782,709 - RR42_RS28645 0.82 -1.2
1,782,810 + -0.1
1,782,857 + -0.4
1,782,857 + -0.4
1,782,857 + +0.4
1,782,858 - +0.6
1,782,876 - +0.2
1,784,035 + -0.1
1,784,035 + +0.7
1,784,035 + +0.9
1,784,036 - -0.7
1,784,036 - +0.9
1,784,090 + -0.5
1,784,090 + +0.6
1,784,090 + +1.7
1,784,091 - -1.4
1,784,091 - +0.1
1,784,091 - +0.4
1,784,091 - -0.2
1,784,091 - +0.9
1,784,092 + +0.5
1,784,092 + -0.2
1,784,092 + -0.2
1,784,092 + -0.1
1,784,093 - +0.7
1,784,093 - +0.4
1,784,093 - +0.1
1,784,093 - -1.2
1,784,093 - +0.8
1,784,093 - +0.2
1,784,212 + -1.1
1,784,212 + +0.9
1,784,283 + -0.4
1,784,283 + -0.2
1,784,530 + RR42_RS28655 0.29 +0.4
1,784,530 + RR42_RS28655 0.29 -0.7
1,784,531 - RR42_RS28655 0.29 +0.6
1,784,703 + RR42_RS28655 0.51 +1.7
1,784,703 + RR42_RS28655 0.51 +0.5
1,784,703 + RR42_RS28655 0.51 +0.3
1,784,703 + RR42_RS28655 0.51 -0.1
1,784,704 - RR42_RS28655 0.51 -0.3
1,784,704 - RR42_RS28655 0.51 -0.4
1,784,949 + RR42_RS28655 0.82 +1.3
1,784,949 + RR42_RS28655 0.82 +1.1
1,784,950 - RR42_RS28655 0.82 -0.0

Or see this region's nucleotide sequence