Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28645 and RR42_RS28650 are separated by 8 nucleotides RR42_RS28650 and RR42_RS28655 are separated by 326 nucleotides
RR42_RS28645: RR42_RS28645 - S-formylglutathione hydrolase, at 1,782,011 to 1,782,862
_RS28645
RR42_RS28650: RR42_RS28650 - alcohol dehydrogenase, at 1,782,871 to 1,783,977
_RS28650
RR42_RS28655: RR42_RS28655 - IclR family transcriptional regulator, at 1,784,304 to 1,785,092
_RS28655
Position (kb)
1782
1783
1784 Strain fitness (log2 ratio)
-1
0
1
2 at 1781.894 kb on + strand at 1781.894 kb on + strand at 1781.894 kb on + strand at 1781.894 kb on + strand at 1781.895 kb on - strand at 1781.895 kb on - strand at 1781.897 kb on + strand at 1781.897 kb on + strand at 1781.897 kb on + strand at 1781.898 kb on - strand at 1781.898 kb on - strand at 1781.898 kb on - strand at 1781.898 kb on - strand at 1781.898 kb on - strand at 1781.898 kb on - strand at 1782.066 kb on + strand at 1782.066 kb on + strand at 1782.067 kb on - strand at 1782.067 kb on - strand at 1782.252 kb on + strand, within RR42_RS28645 at 1782.253 kb on - strand, within RR42_RS28645 at 1782.253 kb on - strand, within RR42_RS28645 at 1782.489 kb on + strand, within RR42_RS28645 at 1782.490 kb on - strand, within RR42_RS28645 at 1782.540 kb on + strand, within RR42_RS28645 at 1782.541 kb on - strand, within RR42_RS28645 at 1782.708 kb on + strand, within RR42_RS28645 at 1782.709 kb on - strand, within RR42_RS28645 at 1782.810 kb on + strand at 1782.857 kb on + strand at 1782.857 kb on + strand at 1782.857 kb on + strand at 1782.858 kb on - strand at 1782.876 kb on - strand at 1784.035 kb on + strand at 1784.035 kb on + strand at 1784.035 kb on + strand at 1784.036 kb on - strand at 1784.036 kb on - strand at 1784.090 kb on + strand at 1784.090 kb on + strand at 1784.090 kb on + strand at 1784.091 kb on - strand at 1784.091 kb on - strand at 1784.091 kb on - strand at 1784.091 kb on - strand at 1784.091 kb on - strand at 1784.092 kb on + strand at 1784.092 kb on + strand at 1784.092 kb on + strand at 1784.092 kb on + strand at 1784.093 kb on - strand at 1784.093 kb on - strand at 1784.093 kb on - strand at 1784.093 kb on - strand at 1784.093 kb on - strand at 1784.093 kb on - strand at 1784.212 kb on + strand at 1784.212 kb on + strand at 1784.283 kb on + strand at 1784.283 kb on + strand at 1784.530 kb on + strand, within RR42_RS28655 at 1784.530 kb on + strand, within RR42_RS28655 at 1784.531 kb on - strand, within RR42_RS28655 at 1784.703 kb on + strand, within RR42_RS28655 at 1784.703 kb on + strand, within RR42_RS28655 at 1784.703 kb on + strand, within RR42_RS28655 at 1784.703 kb on + strand, within RR42_RS28655 at 1784.704 kb on - strand, within RR42_RS28655 at 1784.704 kb on - strand, within RR42_RS28655 at 1784.949 kb on + strand, within RR42_RS28655 at 1784.949 kb on + strand, within RR42_RS28655 at 1784.950 kb on - strand, within RR42_RS28655
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 1,781,894 + +0.4 1,781,894 + +0.4 1,781,894 + +0.5 1,781,894 + -0.2 1,781,895 - -0.3 1,781,895 - -0.0 1,781,897 + -0.5 1,781,897 + -1.0 1,781,897 + +0.5 1,781,898 - +0.1 1,781,898 - -0.9 1,781,898 - +0.4 1,781,898 - -0.6 1,781,898 - -0.1 1,781,898 - -0.3 1,782,066 + +0.5 1,782,066 + -0.4 1,782,067 - -0.2 1,782,067 - +1.7 1,782,252 + RR42_RS28645 0.28 -0.2 1,782,253 - RR42_RS28645 0.28 -1.0 1,782,253 - RR42_RS28645 0.28 +1.0 1,782,489 + RR42_RS28645 0.56 -0.5 1,782,490 - RR42_RS28645 0.56 +0.7 1,782,540 + RR42_RS28645 0.62 +0.1 1,782,541 - RR42_RS28645 0.62 +2.4 1,782,708 + RR42_RS28645 0.82 -0.3 1,782,709 - RR42_RS28645 0.82 -1.2 1,782,810 + -0.1 1,782,857 + -0.4 1,782,857 + -0.4 1,782,857 + +0.4 1,782,858 - +0.6 1,782,876 - +0.2 1,784,035 + -0.1 1,784,035 + +0.7 1,784,035 + +0.9 1,784,036 - -0.7 1,784,036 - +0.9 1,784,090 + -0.5 1,784,090 + +0.6 1,784,090 + +1.7 1,784,091 - -1.4 1,784,091 - +0.1 1,784,091 - +0.4 1,784,091 - -0.2 1,784,091 - +0.9 1,784,092 + +0.5 1,784,092 + -0.2 1,784,092 + -0.2 1,784,092 + -0.1 1,784,093 - +0.7 1,784,093 - +0.4 1,784,093 - +0.1 1,784,093 - -1.2 1,784,093 - +0.8 1,784,093 - +0.2 1,784,212 + -1.1 1,784,212 + +0.9 1,784,283 + -0.4 1,784,283 + -0.2 1,784,530 + RR42_RS28655 0.29 +0.4 1,784,530 + RR42_RS28655 0.29 -0.7 1,784,531 - RR42_RS28655 0.29 +0.6 1,784,703 + RR42_RS28655 0.51 +1.7 1,784,703 + RR42_RS28655 0.51 +0.5 1,784,703 + RR42_RS28655 0.51 +0.3 1,784,703 + RR42_RS28655 0.51 -0.1 1,784,704 - RR42_RS28655 0.51 -0.3 1,784,704 - RR42_RS28655 0.51 -0.4 1,784,949 + RR42_RS28655 0.82 +1.3 1,784,949 + RR42_RS28655 0.82 +1.1 1,784,950 - RR42_RS28655 0.82 -0.0
Or see this region's nucleotide sequence