Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25180 and RR42_RS25185 are separated by 226 nucleotides RR42_RS25185 and RR42_RS25190 are separated by 171 nucleotides
RR42_RS25180: RR42_RS25180 - AraC family transcriptional regulator, at 989,279 to 990,148
_RS25180
RR42_RS25185: RR42_RS25185 - epimerase, at 990,375 to 991,253
_RS25185
RR42_RS25190: RR42_RS25190 - acyl-CoA dehydrogenase, at 991,425 to 993,194
_RS25190
Position (kb) 990
991
992 Strain fitness (log2 ratio) -2
-1
0
1
2 at 989.568 kb on + strand, within RR42_RS25180 at 989.586 kb on - strand, within RR42_RS25180 at 989.694 kb on + strand, within RR42_RS25180 at 989.727 kb on - strand, within RR42_RS25180 at 989.727 kb on - strand, within RR42_RS25180 at 989.856 kb on - strand, within RR42_RS25180 at 989.856 kb on - strand, within RR42_RS25180 at 989.981 kb on + strand, within RR42_RS25180 at 990.173 kb on + strand at 990.174 kb on - strand at 990.245 kb on + strand at 990.306 kb on - strand at 990.340 kb on + strand at 990.388 kb on - strand at 990.584 kb on - strand, within RR42_RS25185 at 990.587 kb on + strand, within RR42_RS25185 at 990.665 kb on - strand, within RR42_RS25185 at 990.665 kb on - strand, within RR42_RS25185 at 990.665 kb on - strand, within RR42_RS25185 at 990.715 kb on - strand, within RR42_RS25185 at 990.845 kb on + strand, within RR42_RS25185 at 990.845 kb on + strand, within RR42_RS25185 at 990.846 kb on - strand, within RR42_RS25185 at 991.184 kb on + strand at 991.239 kb on - strand at 991.260 kb on + strand at 991.261 kb on - strand at 991.273 kb on + strand at 991.273 kb on + strand at 991.273 kb on + strand at 991.274 kb on - strand at 991.274 kb on - strand at 991.359 kb on + strand at 991.360 kb on - strand at 991.489 kb on - strand at 991.489 kb on - strand at 991.513 kb on + strand at 991.513 kb on + strand at 991.543 kb on + strand at 991.544 kb on - strand at 991.544 kb on - strand at 991.544 kb on - strand at 991.609 kb on - strand, within RR42_RS25190 at 991.609 kb on - strand, within RR42_RS25190 at 991.636 kb on + strand, within RR42_RS25190 at 991.636 kb on + strand, within RR42_RS25190 at 991.636 kb on + strand, within RR42_RS25190 at 991.637 kb on - strand, within RR42_RS25190 at 991.637 kb on - strand, within RR42_RS25190 at 991.689 kb on + strand, within RR42_RS25190 at 991.689 kb on + strand, within RR42_RS25190 at 991.689 kb on + strand, within RR42_RS25190 at 991.899 kb on - strand, within RR42_RS25190 at 991.932 kb on - strand, within RR42_RS25190 at 991.941 kb on - strand, within RR42_RS25190 at 991.941 kb on - strand, within RR42_RS25190 at 991.942 kb on + strand, within RR42_RS25190 at 991.943 kb on - strand, within RR42_RS25190 at 991.943 kb on - strand, within RR42_RS25190 at 991.943 kb on - strand, within RR42_RS25190 at 991.943 kb on - strand, within RR42_RS25190 at 992.012 kb on + strand, within RR42_RS25190 at 992.137 kb on + strand, within RR42_RS25190 at 992.137 kb on + strand, within RR42_RS25190 at 992.137 kb on + strand, within RR42_RS25190 at 992.137 kb on + strand, within RR42_RS25190 at 992.138 kb on - strand, within RR42_RS25190 at 992.138 kb on - strand, within RR42_RS25190 at 992.159 kb on + strand, within RR42_RS25190
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 989,568 + RR42_RS25180 0.33 +0.5 989,586 - RR42_RS25180 0.35 -0.6 989,694 + RR42_RS25180 0.48 -0.1 989,727 - RR42_RS25180 0.51 +0.1 989,727 - RR42_RS25180 0.51 -0.2 989,856 - RR42_RS25180 0.66 +0.2 989,856 - RR42_RS25180 0.66 -0.8 989,981 + RR42_RS25180 0.81 +0.7 990,173 + -0.1 990,174 - +0.4 990,245 + -0.6 990,306 - -0.0 990,340 + +0.9 990,388 - -0.8 990,584 - RR42_RS25185 0.24 -0.6 990,587 + RR42_RS25185 0.24 -0.7 990,665 - RR42_RS25185 0.33 -0.4 990,665 - RR42_RS25185 0.33 -1.0 990,665 - RR42_RS25185 0.33 +0.4 990,715 - RR42_RS25185 0.39 -1.4 990,845 + RR42_RS25185 0.53 -1.0 990,845 + RR42_RS25185 0.53 -1.0 990,846 - RR42_RS25185 0.54 +0.2 991,184 + -0.7 991,239 - -0.2 991,260 + -1.2 991,261 - +1.2 991,273 + +0.5 991,273 + +0.2 991,273 + -0.3 991,274 - -0.2 991,274 - -0.0 991,359 + -1.1 991,360 - -0.5 991,489 - -0.3 991,489 - +0.6 991,513 + -0.5 991,513 + -0.3 991,543 + +0.1 991,544 - +0.8 991,544 - +1.7 991,544 - +1.6 991,609 - RR42_RS25190 0.10 -0.0 991,609 - RR42_RS25190 0.10 +1.8 991,636 + RR42_RS25190 0.12 -0.3 991,636 + RR42_RS25190 0.12 -0.1 991,636 + RR42_RS25190 0.12 -0.1 991,637 - RR42_RS25190 0.12 -0.5 991,637 - RR42_RS25190 0.12 -1.8 991,689 + RR42_RS25190 0.15 +0.3 991,689 + RR42_RS25190 0.15 +1.0 991,689 + RR42_RS25190 0.15 +1.2 991,899 - RR42_RS25190 0.27 -1.2 991,932 - RR42_RS25190 0.29 -0.4 991,941 - RR42_RS25190 0.29 +0.6 991,941 - RR42_RS25190 0.29 +1.2 991,942 + RR42_RS25190 0.29 +1.0 991,943 - RR42_RS25190 0.29 +1.6 991,943 - RR42_RS25190 0.29 +0.2 991,943 - RR42_RS25190 0.29 -0.0 991,943 - RR42_RS25190 0.29 -0.8 992,012 + RR42_RS25190 0.33 +0.6 992,137 + RR42_RS25190 0.40 +0.7 992,137 + RR42_RS25190 0.40 -0.3 992,137 + RR42_RS25190 0.40 +1.0 992,137 + RR42_RS25190 0.40 -1.6 992,138 - RR42_RS25190 0.40 +0.5 992,138 - RR42_RS25190 0.40 -0.0 992,159 + RR42_RS25190 0.41 +0.9
Or see this region's nucleotide sequence