Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25010 and RR42_RS25015 are separated by 150 nucleotides RR42_RS25015 and RR42_RS25020 are separated by 22 nucleotides RR42_RS25020 and RR42_RS25025 are separated by 21 nucleotides
RR42_RS25010: RR42_RS25010 - betaine-aldehyde dehydrogenase, at 948,856 to 950,313
_RS25010
RR42_RS25015: RR42_RS25015 - gluconolactonase, at 950,464 to 951,348
_RS25015
RR42_RS25020: RR42_RS25020 - amino acid ABC transporter ATPase, at 951,371 to 952,129
_RS25020
RR42_RS25025: RR42_RS25025 - sugar ABC transporter ATPase, at 952,151 to 952,921
_RS25025
Position (kb) 950
951
952 Strain fitness (log2 ratio) -2
-1
0
1 at 949.881 kb on + strand, within RR42_RS25010 at 949.881 kb on + strand, within RR42_RS25010 at 949.881 kb on + strand, within RR42_RS25010 at 949.882 kb on - strand, within RR42_RS25010 at 949.946 kb on + strand, within RR42_RS25010 at 949.987 kb on - strand, within RR42_RS25010 at 950.067 kb on + strand, within RR42_RS25010 at 950.249 kb on - strand at 950.397 kb on - strand at 950.397 kb on - strand at 950.397 kb on - strand at 950.600 kb on + strand, within RR42_RS25015 at 950.600 kb on + strand, within RR42_RS25015 at 950.601 kb on - strand, within RR42_RS25015 at 951.263 kb on + strand at 951.269 kb on + strand at 951.269 kb on + strand at 951.269 kb on + strand at 951.270 kb on - strand at 951.270 kb on - strand at 951.396 kb on + strand at 951.397 kb on - strand at 952.164 kb on + strand at 952.165 kb on - strand at 952.242 kb on + strand, within RR42_RS25025 at 952.243 kb on - strand, within RR42_RS25025 at 952.243 kb on - strand, within RR42_RS25025 at 952.243 kb on - strand, within RR42_RS25025 at 952.248 kb on + strand, within RR42_RS25025 at 952.249 kb on - strand, within RR42_RS25025
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 949,881 + RR42_RS25010 0.70 -0.4 949,881 + RR42_RS25010 0.70 -0.4 949,881 + RR42_RS25010 0.70 +1.4 949,882 - RR42_RS25010 0.70 -0.4 949,946 + RR42_RS25010 0.75 -0.4 949,987 - RR42_RS25010 0.78 -0.8 950,067 + RR42_RS25010 0.83 -1.1 950,249 - -0.6 950,397 - -0.8 950,397 - -2.2 950,397 - -0.0 950,600 + RR42_RS25015 0.15 +1.3 950,600 + RR42_RS25015 0.15 +0.2 950,601 - RR42_RS25015 0.15 +0.6 951,263 + +1.2 951,269 + +0.2 951,269 + +0.2 951,269 + -0.6 951,270 - -0.8 951,270 - +0.6 951,396 + -0.9 951,397 - +0.1 952,164 + +0.4 952,165 - -0.0 952,242 + RR42_RS25025 0.12 +0.2 952,243 - RR42_RS25025 0.12 -0.0 952,243 - RR42_RS25025 0.12 +0.3 952,243 - RR42_RS25025 0.12 -0.2 952,248 + RR42_RS25025 0.13 +0.5 952,249 - RR42_RS25025 0.13 -0.0
Or see this region's nucleotide sequence