Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24070

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24065 and RR42_RS24070 are separated by 24 nucleotidesRR42_RS24070 and RR42_RS24075 are separated by 71 nucleotides RR42_RS24065: RR42_RS24065 - hypothetical protein, at 723,591 to 725,030 _RS24065 RR42_RS24070: RR42_RS24070 - hypothetical protein, at 725,055 to 726,113 _RS24070 RR42_RS24075: RR42_RS24075 - hypothetical protein, at 726,185 to 727,162 _RS24075 Position (kb) 725 726 727Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 724.156 kb on + strand, within RR42_RS24065at 724.156 kb on + strand, within RR42_RS24065at 724.157 kb on - strand, within RR42_RS24065at 724.157 kb on - strand, within RR42_RS24065at 724.157 kb on - strand, within RR42_RS24065at 724.477 kb on - strand, within RR42_RS24065at 724.477 kb on - strand, within RR42_RS24065at 724.540 kb on + strand, within RR42_RS24065at 724.598 kb on + strand, within RR42_RS24065at 724.599 kb on - strand, within RR42_RS24065at 724.828 kb on - strand, within RR42_RS24065at 724.944 kb on - strandat 724.949 kb on + strandat 724.950 kb on - strandat 725.038 kb on + strandat 725.038 kb on + strandat 725.039 kb on - strandat 725.092 kb on + strandat 725.149 kb on + strandat 725.150 kb on - strandat 725.171 kb on + strand, within RR42_RS24070at 725.183 kb on + strand, within RR42_RS24070at 725.183 kb on + strand, within RR42_RS24070at 725.183 kb on + strand, within RR42_RS24070at 725.197 kb on - strand, within RR42_RS24070at 725.197 kb on - strand, within RR42_RS24070at 725.197 kb on - strand, within RR42_RS24070at 725.204 kb on + strand, within RR42_RS24070at 725.338 kb on + strand, within RR42_RS24070at 725.338 kb on + strand, within RR42_RS24070at 725.339 kb on - strand, within RR42_RS24070at 725.339 kb on - strand, within RR42_RS24070at 725.339 kb on - strand, within RR42_RS24070at 725.339 kb on - strand, within RR42_RS24070at 725.340 kb on + strand, within RR42_RS24070at 725.341 kb on - strand, within RR42_RS24070at 725.350 kb on + strand, within RR42_RS24070at 725.439 kb on + strand, within RR42_RS24070at 725.440 kb on - strand, within RR42_RS24070at 725.440 kb on - strand, within RR42_RS24070at 725.449 kb on - strand, within RR42_RS24070at 725.449 kb on - strand, within RR42_RS24070at 725.449 kb on - strand, within RR42_RS24070at 725.472 kb on + strand, within RR42_RS24070at 725.473 kb on - strand, within RR42_RS24070at 725.484 kb on + strand, within RR42_RS24070at 725.502 kb on + strand, within RR42_RS24070at 725.502 kb on + strand, within RR42_RS24070at 725.502 kb on + strand, within RR42_RS24070at 725.502 kb on + strand, within RR42_RS24070at 725.503 kb on - strand, within RR42_RS24070at 725.503 kb on - strand, within RR42_RS24070at 725.569 kb on - strand, within RR42_RS24070at 725.582 kb on + strand, within RR42_RS24070at 725.912 kb on - strand, within RR42_RS24070at 725.943 kb on + strand, within RR42_RS24070at 725.943 kb on + strand, within RR42_RS24070at 725.943 kb on + strand, within RR42_RS24070at 725.944 kb on - strand, within RR42_RS24070at 726.001 kb on + strand, within RR42_RS24070at 726.002 kb on - strand, within RR42_RS24070at 726.002 kb on - strand, within RR42_RS24070at 726.002 kb on - strand, within RR42_RS24070at 726.016 kb on + strandat 726.016 kb on + strandat 726.111 kb on + strandat 726.112 kb on - strandat 726.168 kb on + strandat 726.168 kb on + strandat 726.169 kb on - strandat 726.169 kb on - strandat 726.174 kb on - strandat 726.267 kb on + strandat 726.288 kb on + strand, within RR42_RS24075at 726.289 kb on - strand, within RR42_RS24075at 726.330 kb on - strand, within RR42_RS24075at 726.330 kb on - strand, within RR42_RS24075at 726.416 kb on - strand, within RR42_RS24075at 726.416 kb on - strand, within RR42_RS24075at 726.428 kb on + strand, within RR42_RS24075at 726.428 kb on + strand, within RR42_RS24075at 726.428 kb on + strand, within RR42_RS24075at 726.429 kb on - strand, within RR42_RS24075at 726.429 kb on - strand, within RR42_RS24075at 726.432 kb on + strand, within RR42_RS24075at 726.432 kb on + strand, within RR42_RS24075at 726.573 kb on + strand, within RR42_RS24075at 726.653 kb on + strand, within RR42_RS24075at 726.654 kb on - strand, within RR42_RS24075at 726.654 kb on - strand, within RR42_RS24075at 726.673 kb on + strand, within RR42_RS24075at 726.674 kb on - strand, within RR42_RS24075at 726.677 kb on + strand, within RR42_RS24075at 726.677 kb on + strand, within RR42_RS24075at 726.678 kb on - strand, within RR42_RS24075at 726.852 kb on + strand, within RR42_RS24075at 726.852 kb on + strand, within RR42_RS24075at 726.852 kb on + strand, within RR42_RS24075at 726.861 kb on + strand, within RR42_RS24075at 726.861 kb on + strand, within RR42_RS24075at 726.861 kb on + strand, within RR42_RS24075at 726.894 kb on + strand, within RR42_RS24075at 726.895 kb on - strand, within RR42_RS24075at 726.967 kb on + strand, within RR42_RS24075at 726.993 kb on + strand, within RR42_RS24075at 726.993 kb on + strand, within RR42_RS24075at 726.994 kb on - strand, within RR42_RS24075at 727.046 kb on - strand, within RR42_RS24075at 727.048 kb on - strand, within RR42_RS24075at 727.103 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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724,156 + RR42_RS24065 0.39 +0.6
724,156 + RR42_RS24065 0.39 -0.4
724,157 - RR42_RS24065 0.39 -0.4
724,157 - RR42_RS24065 0.39 -0.6
724,157 - RR42_RS24065 0.39 -0.0
724,477 - RR42_RS24065 0.62 -0.5
724,477 - RR42_RS24065 0.62 +1.3
724,540 + RR42_RS24065 0.66 +0.6
724,598 + RR42_RS24065 0.70 +0.3
724,599 - RR42_RS24065 0.70 -0.0
724,828 - RR42_RS24065 0.86 +0.9
724,944 - -2.0
724,949 + +0.3
724,950 - +0.2
725,038 + +0.1
725,038 + +1.0
725,039 - -0.7
725,092 + -0.0
725,149 + -0.1
725,150 - +1.6
725,171 + RR42_RS24070 0.11 -0.7
725,183 + RR42_RS24070 0.12 +0.0
725,183 + RR42_RS24070 0.12 -0.1
725,183 + RR42_RS24070 0.12 -0.7
725,197 - RR42_RS24070 0.13 +1.1
725,197 - RR42_RS24070 0.13 +0.4
725,197 - RR42_RS24070 0.13 +0.2
725,204 + RR42_RS24070 0.14 +0.4
725,338 + RR42_RS24070 0.27 +0.1
725,338 + RR42_RS24070 0.27 -1.0
725,339 - RR42_RS24070 0.27 +1.8
725,339 - RR42_RS24070 0.27 +0.7
725,339 - RR42_RS24070 0.27 -0.2
725,339 - RR42_RS24070 0.27 +0.4
725,340 + RR42_RS24070 0.27 +0.9
725,341 - RR42_RS24070 0.27 +0.0
725,350 + RR42_RS24070 0.28 -3.0
725,439 + RR42_RS24070 0.36 -0.4
725,440 - RR42_RS24070 0.36 +0.6
725,440 - RR42_RS24070 0.36 -1.6
725,449 - RR42_RS24070 0.37 -0.4
725,449 - RR42_RS24070 0.37 -0.2
725,449 - RR42_RS24070 0.37 +0.6
725,472 + RR42_RS24070 0.39 -1.4
725,473 - RR42_RS24070 0.39 -0.7
725,484 + RR42_RS24070 0.41 +0.0
725,502 + RR42_RS24070 0.42 -1.0
725,502 + RR42_RS24070 0.42 +0.2
725,502 + RR42_RS24070 0.42 -1.2
725,502 + RR42_RS24070 0.42 -1.8
725,503 - RR42_RS24070 0.42 +0.5
725,503 - RR42_RS24070 0.42 -0.2
725,569 - RR42_RS24070 0.49 -0.1
725,582 + RR42_RS24070 0.50 +0.9
725,912 - RR42_RS24070 0.81 -0.9
725,943 + RR42_RS24070 0.84 +0.1
725,943 + RR42_RS24070 0.84 -1.3
725,943 + RR42_RS24070 0.84 -0.2
725,944 - RR42_RS24070 0.84 +0.2
726,001 + RR42_RS24070 0.89 +0.6
726,002 - RR42_RS24070 0.89 -0.4
726,002 - RR42_RS24070 0.89 -0.6
726,002 - RR42_RS24070 0.89 -0.6
726,016 + +0.6
726,016 + +0.2
726,111 + -0.1
726,112 - +0.8
726,168 + -0.4
726,168 + -0.7
726,169 - -1.2
726,169 - +1.4
726,174 - -0.9
726,267 + +0.2
726,288 + RR42_RS24075 0.11 +0.3
726,289 - RR42_RS24075 0.11 -0.2
726,330 - RR42_RS24075 0.15 -1.8
726,330 - RR42_RS24075 0.15 -0.1
726,416 - RR42_RS24075 0.24 +0.7
726,416 - RR42_RS24075 0.24 -0.0
726,428 + RR42_RS24075 0.25 +0.1
726,428 + RR42_RS24075 0.25 +2.4
726,428 + RR42_RS24075 0.25 +0.2
726,429 - RR42_RS24075 0.25 -0.1
726,429 - RR42_RS24075 0.25 +1.9
726,432 + RR42_RS24075 0.25 +0.4
726,432 + RR42_RS24075 0.25 +0.6
726,573 + RR42_RS24075 0.40 +0.9
726,653 + RR42_RS24075 0.48 +0.2
726,654 - RR42_RS24075 0.48 -0.1
726,654 - RR42_RS24075 0.48 -0.3
726,673 + RR42_RS24075 0.50 +0.3
726,674 - RR42_RS24075 0.50 -2.0
726,677 + RR42_RS24075 0.50 +0.0
726,677 + RR42_RS24075 0.50 +0.6
726,678 - RR42_RS24075 0.50 -0.1
726,852 + RR42_RS24075 0.68 -0.3
726,852 + RR42_RS24075 0.68 -1.6
726,852 + RR42_RS24075 0.68 -0.1
726,861 + RR42_RS24075 0.69 -0.1
726,861 + RR42_RS24075 0.69 +0.4
726,861 + RR42_RS24075 0.69 -0.2
726,894 + RR42_RS24075 0.72 +1.8
726,895 - RR42_RS24075 0.73 -0.8
726,967 + RR42_RS24075 0.80 +0.9
726,993 + RR42_RS24075 0.83 -1.0
726,993 + RR42_RS24075 0.83 -0.5
726,994 - RR42_RS24075 0.83 -0.5
727,046 - RR42_RS24075 0.88 +0.1
727,048 - RR42_RS24075 0.88 -0.3
727,103 - -0.1

Or see this region's nucleotide sequence