Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24045

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24040 and RR42_RS24045 are separated by 410 nucleotidesRR42_RS24045 and RR42_RS24050 are separated by 43 nucleotides RR42_RS24040: RR42_RS24040 - hypothetical protein, at 717,328 to 718,089 _RS24040 RR42_RS24045: RR42_RS24045 - gentisate 1,2-dioxygenase, at 718,500 to 719,561 _RS24045 RR42_RS24050: RR42_RS24050 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 719,605 to 721,257 _RS24050 Position (kb) 718 719 720Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 717.541 kb on + strand, within RR42_RS24040at 717.542 kb on - strand, within RR42_RS24040at 717.554 kb on - strand, within RR42_RS24040at 717.597 kb on + strand, within RR42_RS24040at 717.603 kb on - strand, within RR42_RS24040at 717.783 kb on + strand, within RR42_RS24040at 717.784 kb on - strand, within RR42_RS24040at 718.127 kb on - strandat 718.163 kb on + strandat 718.163 kb on + strandat 718.164 kb on - strandat 718.164 kb on - strandat 718.164 kb on - strandat 718.164 kb on - strandat 718.238 kb on + strandat 718.245 kb on + strandat 718.246 kb on - strandat 718.246 kb on - strandat 718.364 kb on + strandat 718.372 kb on + strandat 718.585 kb on + strandat 718.585 kb on + strandat 718.585 kb on + strandat 718.686 kb on - strand, within RR42_RS24045at 718.899 kb on + strand, within RR42_RS24045at 718.900 kb on - strand, within RR42_RS24045at 718.900 kb on - strand, within RR42_RS24045at 719.031 kb on + strand, within RR42_RS24045at 719.043 kb on + strand, within RR42_RS24045at 719.044 kb on - strand, within RR42_RS24045at 719.089 kb on - strand, within RR42_RS24045at 719.231 kb on + strand, within RR42_RS24045at 719.232 kb on - strand, within RR42_RS24045at 719.232 kb on - strand, within RR42_RS24045at 719.244 kb on + strand, within RR42_RS24045at 719.245 kb on - strand, within RR42_RS24045at 719.358 kb on + strand, within RR42_RS24045at 719.358 kb on + strand, within RR42_RS24045at 719.358 kb on + strand, within RR42_RS24045at 719.358 kb on + strand, within RR42_RS24045at 719.359 kb on - strand, within RR42_RS24045at 719.359 kb on - strand, within RR42_RS24045at 719.363 kb on - strand, within RR42_RS24045at 719.363 kb on - strand, within RR42_RS24045at 719.465 kb on + strandat 719.465 kb on + strandat 719.465 kb on + strandat 719.465 kb on + strandat 719.466 kb on - strandat 719.466 kb on - strandat 719.466 kb on - strandat 719.505 kb on - strandat 719.524 kb on + strandat 719.592 kb on + strandat 719.593 kb on - strandat 719.593 kb on - strandat 719.593 kb on - strandat 719.593 kb on - strandat 719.599 kb on - strandat 719.631 kb on + strandat 719.750 kb on + strandat 719.750 kb on + strandat 719.751 kb on - strandat 719.751 kb on - strandat 719.760 kb on + strandat 719.771 kb on - strand, within RR42_RS24050at 719.816 kb on - strand, within RR42_RS24050at 719.816 kb on - strand, within RR42_RS24050at 719.816 kb on - strand, within RR42_RS24050at 720.013 kb on + strand, within RR42_RS24050at 720.014 kb on - strand, within RR42_RS24050at 720.112 kb on + strand, within RR42_RS24050at 720.112 kb on + strand, within RR42_RS24050at 720.113 kb on - strand, within RR42_RS24050at 720.113 kb on - strand, within RR42_RS24050at 720.113 kb on - strand, within RR42_RS24050at 720.193 kb on + strand, within RR42_RS24050at 720.193 kb on + strand, within RR42_RS24050at 720.193 kb on + strand, within RR42_RS24050at 720.262 kb on + strand, within RR42_RS24050at 720.262 kb on + strand, within RR42_RS24050at 720.262 kb on + strand, within RR42_RS24050at 720.263 kb on - strand, within RR42_RS24050at 720.309 kb on + strand, within RR42_RS24050at 720.352 kb on - strand, within RR42_RS24050at 720.352 kb on - strand, within RR42_RS24050at 720.395 kb on + strand, within RR42_RS24050at 720.395 kb on + strand, within RR42_RS24050at 720.475 kb on + strand, within RR42_RS24050at 720.491 kb on + strand, within RR42_RS24050at 720.549 kb on + strand, within RR42_RS24050at 720.550 kb on - strand, within RR42_RS24050at 720.550 kb on - strand, within RR42_RS24050at 720.550 kb on - strand, within RR42_RS24050

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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717,541 + RR42_RS24040 0.28 -1.4
717,542 - RR42_RS24040 0.28 +0.9
717,554 - RR42_RS24040 0.30 -0.7
717,597 + RR42_RS24040 0.35 -3.1
717,603 - RR42_RS24040 0.36 -0.0
717,783 + RR42_RS24040 0.60 -2.4
717,784 - RR42_RS24040 0.60 -2.1
718,127 - -1.1
718,163 + -0.7
718,163 + +0.2
718,164 - +1.1
718,164 - +0.1
718,164 - -0.1
718,164 - +0.3
718,238 + +0.6
718,245 + -1.7
718,246 - -1.2
718,246 - -0.9
718,364 + -2.4
718,372 + -1.5
718,585 + +0.2
718,585 + -0.0
718,585 + -2.1
718,686 - RR42_RS24045 0.18 -1.6
718,899 + RR42_RS24045 0.38 +3.2
718,900 - RR42_RS24045 0.38 -0.0
718,900 - RR42_RS24045 0.38 +0.9
719,031 + RR42_RS24045 0.50 +0.2
719,043 + RR42_RS24045 0.51 -0.7
719,044 - RR42_RS24045 0.51 +0.7
719,089 - RR42_RS24045 0.55 -0.2
719,231 + RR42_RS24045 0.69 +0.9
719,232 - RR42_RS24045 0.69 -1.2
719,232 - RR42_RS24045 0.69 -1.4
719,244 + RR42_RS24045 0.70 -0.6
719,245 - RR42_RS24045 0.70 +0.9
719,358 + RR42_RS24045 0.81 +0.5
719,358 + RR42_RS24045 0.81 +0.4
719,358 + RR42_RS24045 0.81 -0.4
719,358 + RR42_RS24045 0.81 +0.3
719,359 - RR42_RS24045 0.81 -0.2
719,359 - RR42_RS24045 0.81 -1.4
719,363 - RR42_RS24045 0.81 +0.2
719,363 - RR42_RS24045 0.81 -0.2
719,465 + +0.0
719,465 + -0.8
719,465 + +1.0
719,465 + +0.1
719,466 - +0.0
719,466 - +0.5
719,466 - +0.9
719,505 - -0.5
719,524 + -0.5
719,592 + -0.1
719,593 - +2.2
719,593 - -1.8
719,593 - -0.8
719,593 - +0.2
719,599 - -0.4
719,631 + -0.0
719,750 + +0.8
719,750 + -0.3
719,751 - -0.1
719,751 - -0.1
719,760 + -0.1
719,771 - RR42_RS24050 0.10 -0.1
719,816 - RR42_RS24050 0.13 -1.0
719,816 - RR42_RS24050 0.13 -1.8
719,816 - RR42_RS24050 0.13 -0.2
720,013 + RR42_RS24050 0.25 +0.5
720,014 - RR42_RS24050 0.25 -2.0
720,112 + RR42_RS24050 0.31 +0.5
720,112 + RR42_RS24050 0.31 -0.1
720,113 - RR42_RS24050 0.31 +0.3
720,113 - RR42_RS24050 0.31 +0.1
720,113 - RR42_RS24050 0.31 +0.1
720,193 + RR42_RS24050 0.36 -0.4
720,193 + RR42_RS24050 0.36 -3.0
720,193 + RR42_RS24050 0.36 -1.0
720,262 + RR42_RS24050 0.40 -0.7
720,262 + RR42_RS24050 0.40 +0.2
720,262 + RR42_RS24050 0.40 +0.1
720,263 - RR42_RS24050 0.40 +0.1
720,309 + RR42_RS24050 0.43 +0.2
720,352 - RR42_RS24050 0.45 -0.4
720,352 - RR42_RS24050 0.45 +0.4
720,395 + RR42_RS24050 0.48 +0.8
720,395 + RR42_RS24050 0.48 +0.1
720,475 + RR42_RS24050 0.53 -0.1
720,491 + RR42_RS24050 0.54 -0.3
720,549 + RR42_RS24050 0.57 -1.3
720,550 - RR42_RS24050 0.57 +0.7
720,550 - RR42_RS24050 0.57 +0.2
720,550 - RR42_RS24050 0.57 +0.2

Or see this region's nucleotide sequence