Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23720

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23710 and RR42_RS23715 are separated by 216 nucleotidesRR42_RS23715 and RR42_RS23720 are separated by 206 nucleotidesRR42_RS23720 and RR42_RS23725 are separated by 270 nucleotides RR42_RS23710: RR42_RS23710 - enoyl-CoA hydratase, at 645,918 to 646,667 _RS23710 RR42_RS23715: RR42_RS23715 - amino acid ABC transporter permease, at 646,884 to 647,207 _RS23715 RR42_RS23720: RR42_RS23720 - hypothetical protein, at 647,414 to 648,286 _RS23720 RR42_RS23725: RR42_RS23725 - phenylacetate-CoA oxygenase, at 648,557 to 649,561 _RS23725 Position (kb) 647 648 649Strain fitness (log2 ratio) -2 -1 0 1 2at 646.420 kb on + strand, within RR42_RS23710at 646.420 kb on + strand, within RR42_RS23710at 646.666 kb on - strandat 646.789 kb on + strandat 646.789 kb on + strandat 646.790 kb on - strandat 646.792 kb on + strandat 646.793 kb on - strandat 646.803 kb on + strandat 646.902 kb on - strandat 646.974 kb on + strand, within RR42_RS23715at 646.975 kb on - strand, within RR42_RS23715at 647.010 kb on + strand, within RR42_RS23715at 647.010 kb on + strand, within RR42_RS23715at 647.011 kb on - strand, within RR42_RS23715at 647.011 kb on - strand, within RR42_RS23715at 647.011 kb on - strand, within RR42_RS23715at 647.047 kb on - strand, within RR42_RS23715at 647.048 kb on + strand, within RR42_RS23715at 647.048 kb on + strand, within RR42_RS23715at 647.159 kb on + strand, within RR42_RS23715at 647.160 kb on - strand, within RR42_RS23715at 647.160 kb on - strand, within RR42_RS23715at 647.160 kb on - strand, within RR42_RS23715at 647.517 kb on + strand, within RR42_RS23720at 647.518 kb on - strand, within RR42_RS23720at 647.563 kb on + strand, within RR42_RS23720at 647.564 kb on - strand, within RR42_RS23720at 647.605 kb on - strand, within RR42_RS23720at 647.616 kb on - strand, within RR42_RS23720at 647.739 kb on + strand, within RR42_RS23720at 647.739 kb on + strand, within RR42_RS23720at 647.739 kb on + strand, within RR42_RS23720at 647.739 kb on + strand, within RR42_RS23720at 647.740 kb on - strand, within RR42_RS23720at 647.740 kb on - strand, within RR42_RS23720at 647.740 kb on - strand, within RR42_RS23720at 647.783 kb on + strand, within RR42_RS23720at 647.784 kb on - strand, within RR42_RS23720at 647.784 kb on - strand, within RR42_RS23720at 647.784 kb on - strand, within RR42_RS23720at 647.784 kb on - strand, within RR42_RS23720at 647.814 kb on + strand, within RR42_RS23720at 647.834 kb on + strand, within RR42_RS23720at 647.834 kb on + strand, within RR42_RS23720at 647.835 kb on - strand, within RR42_RS23720at 647.835 kb on - strand, within RR42_RS23720at 647.835 kb on - strand, within RR42_RS23720at 647.853 kb on + strand, within RR42_RS23720at 647.865 kb on + strand, within RR42_RS23720at 647.865 kb on + strand, within RR42_RS23720at 648.008 kb on - strand, within RR42_RS23720at 648.243 kb on - strandat 648.243 kb on - strandat 648.316 kb on + strandat 648.316 kb on + strandat 648.316 kb on + strandat 648.388 kb on + strandat 648.389 kb on - strandat 648.402 kb on + strandat 648.402 kb on + strandat 648.402 kb on + strandat 648.402 kb on + strandat 648.403 kb on - strandat 648.476 kb on + strandat 648.479 kb on - strandat 648.560 kb on + strandat 648.560 kb on + strandat 648.560 kb on + strandat 648.560 kb on + strandat 648.560 kb on + strandat 648.560 kb on + strandat 648.561 kb on - strandat 648.561 kb on - strandat 648.561 kb on - strandat 648.561 kb on - strandat 648.561 kb on - strandat 648.561 kb on - strandat 648.561 kb on - strandat 648.701 kb on + strand, within RR42_RS23725at 648.702 kb on - strand, within RR42_RS23725at 648.702 kb on - strand, within RR42_RS23725at 648.854 kb on + strand, within RR42_RS23725at 648.855 kb on - strand, within RR42_RS23725at 648.855 kb on - strand, within RR42_RS23725at 648.861 kb on - strand, within RR42_RS23725at 648.932 kb on + strand, within RR42_RS23725at 648.932 kb on + strand, within RR42_RS23725at 648.933 kb on - strand, within RR42_RS23725at 649.043 kb on + strand, within RR42_RS23725at 649.043 kb on + strand, within RR42_RS23725

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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646,420 + RR42_RS23710 0.67 -0.8
646,420 + RR42_RS23710 0.67 -1.0
646,666 - +1.2
646,789 + -0.1
646,789 + -0.1
646,790 - -0.1
646,792 + +0.0
646,793 - +0.2
646,803 + +0.5
646,902 - +0.1
646,974 + RR42_RS23715 0.28 -2.4
646,975 - RR42_RS23715 0.28 +0.4
647,010 + RR42_RS23715 0.39 +0.9
647,010 + RR42_RS23715 0.39 -0.0
647,011 - RR42_RS23715 0.39 -0.2
647,011 - RR42_RS23715 0.39 +1.2
647,011 - RR42_RS23715 0.39 -0.9
647,047 - RR42_RS23715 0.50 -0.1
647,048 + RR42_RS23715 0.51 +0.5
647,048 + RR42_RS23715 0.51 +0.4
647,159 + RR42_RS23715 0.85 -1.0
647,160 - RR42_RS23715 0.85 +0.2
647,160 - RR42_RS23715 0.85 -0.2
647,160 - RR42_RS23715 0.85 +0.1
647,517 + RR42_RS23720 0.12 +0.6
647,518 - RR42_RS23720 0.12 -0.9
647,563 + RR42_RS23720 0.17 +0.4
647,564 - RR42_RS23720 0.17 +0.5
647,605 - RR42_RS23720 0.22 -0.2
647,616 - RR42_RS23720 0.23 -1.1
647,739 + RR42_RS23720 0.37 -0.4
647,739 + RR42_RS23720 0.37 -0.2
647,739 + RR42_RS23720 0.37 -2.1
647,739 + RR42_RS23720 0.37 -0.6
647,740 - RR42_RS23720 0.37 -0.0
647,740 - RR42_RS23720 0.37 -0.8
647,740 - RR42_RS23720 0.37 +0.5
647,783 + RR42_RS23720 0.42 +0.2
647,784 - RR42_RS23720 0.42 -0.1
647,784 - RR42_RS23720 0.42 -0.8
647,784 - RR42_RS23720 0.42 -0.5
647,784 - RR42_RS23720 0.42 -0.2
647,814 + RR42_RS23720 0.46 -1.0
647,834 + RR42_RS23720 0.48 +0.2
647,834 + RR42_RS23720 0.48 -0.5
647,835 - RR42_RS23720 0.48 +0.4
647,835 - RR42_RS23720 0.48 +0.1
647,835 - RR42_RS23720 0.48 -0.1
647,853 + RR42_RS23720 0.50 -0.1
647,865 + RR42_RS23720 0.52 +0.0
647,865 + RR42_RS23720 0.52 +1.2
648,008 - RR42_RS23720 0.68 -0.5
648,243 - -0.6
648,243 - -0.6
648,316 + +1.9
648,316 + -0.1
648,316 + +0.5
648,388 + +0.5
648,389 - +0.2
648,402 + -0.4
648,402 + +0.4
648,402 + -0.8
648,402 + -0.5
648,403 - +0.7
648,476 + +0.0
648,479 - +0.1
648,560 + -0.3
648,560 + -0.0
648,560 + +0.8
648,560 + -0.4
648,560 + +0.2
648,560 + -0.1
648,561 - +0.2
648,561 - -0.8
648,561 - -1.5
648,561 - -0.4
648,561 - +0.1
648,561 - -0.4
648,561 - -0.2
648,701 + RR42_RS23725 0.14 -0.0
648,702 - RR42_RS23725 0.14 -0.2
648,702 - RR42_RS23725 0.14 +0.0
648,854 + RR42_RS23725 0.30 -1.0
648,855 - RR42_RS23725 0.30 +0.2
648,855 - RR42_RS23725 0.30 -0.3
648,861 - RR42_RS23725 0.30 +0.0
648,932 + RR42_RS23725 0.37 -0.5
648,932 + RR42_RS23725 0.37 -0.9
648,933 - RR42_RS23725 0.37 +0.2
649,043 + RR42_RS23725 0.48 -0.3
649,043 + RR42_RS23725 0.48 -0.1

Or see this region's nucleotide sequence