Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22840 and RR42_RS22845 are separated by 115 nucleotides RR42_RS22845 and RR42_RS22850 are separated by 118 nucleotides
RR42_RS22840: RR42_RS22840 - DeoR family transcriptional regulator, at 455,951 to 457,186
_RS22840
RR42_RS22845: RR42_RS22845 - cell envelope biogenesis protein OmpA, at 457,302 to 457,796
_RS22845
RR42_RS22850: RR42_RS22850 - amino acid dehydrogenase, at 457,915 to 458,958
_RS22850
Position (kb) 457
458 Strain fitness (log2 ratio) -2
-1
0
1 at 456.479 kb on + strand, within RR42_RS22840 at 456.480 kb on - strand, within RR42_RS22840 at 456.480 kb on - strand, within RR42_RS22840 at 456.480 kb on - strand, within RR42_RS22840 at 456.480 kb on - strand, within RR42_RS22840 at 456.480 kb on - strand, within RR42_RS22840 at 456.506 kb on - strand, within RR42_RS22840 at 456.791 kb on + strand, within RR42_RS22840 at 456.791 kb on + strand, within RR42_RS22840 at 456.806 kb on + strand, within RR42_RS22840 at 456.806 kb on + strand, within RR42_RS22840 at 457.006 kb on + strand, within RR42_RS22840 at 457.006 kb on + strand, within RR42_RS22840 at 457.033 kb on - strand, within RR42_RS22840 at 457.276 kb on + strand at 457.276 kb on + strand at 457.277 kb on - strand at 457.277 kb on - strand at 457.589 kb on + strand, within RR42_RS22845 at 457.916 kb on + strand at 457.916 kb on + strand at 457.917 kb on - strand at 458.072 kb on + strand, within RR42_RS22850 at 458.072 kb on + strand, within RR42_RS22850 at 458.088 kb on + strand, within RR42_RS22850 at 458.088 kb on + strand, within RR42_RS22850 at 458.088 kb on + strand, within RR42_RS22850 at 458.126 kb on + strand, within RR42_RS22850 at 458.127 kb on - strand, within RR42_RS22850 at 458.181 kb on + strand, within RR42_RS22850 at 458.570 kb on + strand, within RR42_RS22850 at 458.571 kb on - strand, within RR42_RS22850 at 458.605 kb on + strand, within RR42_RS22850 at 458.606 kb on - strand, within RR42_RS22850 at 458.606 kb on - strand, within RR42_RS22850 at 458.636 kb on + strand, within RR42_RS22850 at 458.637 kb on - strand, within RR42_RS22850 at 458.765 kb on + strand, within RR42_RS22850 at 458.765 kb on + strand, within RR42_RS22850 at 458.766 kb on - strand, within RR42_RS22850
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 456,479 + RR42_RS22840 0.43 -0.6 456,480 - RR42_RS22840 0.43 -0.9 456,480 - RR42_RS22840 0.43 -0.8 456,480 - RR42_RS22840 0.43 +0.8 456,480 - RR42_RS22840 0.43 -0.6 456,480 - RR42_RS22840 0.43 -0.5 456,506 - RR42_RS22840 0.45 -0.6 456,791 + RR42_RS22840 0.68 -0.1 456,791 + RR42_RS22840 0.68 +0.2 456,806 + RR42_RS22840 0.69 +0.6 456,806 + RR42_RS22840 0.69 -0.4 457,006 + RR42_RS22840 0.85 +0.2 457,006 + RR42_RS22840 0.85 +0.7 457,033 - RR42_RS22840 0.88 -0.4 457,276 + -0.0 457,276 + +0.7 457,277 - +0.1 457,277 - +0.1 457,589 + RR42_RS22845 0.58 +0.6 457,916 + -1.4 457,916 + -0.2 457,917 - -0.2 458,072 + RR42_RS22850 0.15 -0.5 458,072 + RR42_RS22850 0.15 +0.3 458,088 + RR42_RS22850 0.17 -1.4 458,088 + RR42_RS22850 0.17 -1.7 458,088 + RR42_RS22850 0.17 -0.9 458,126 + RR42_RS22850 0.20 -1.0 458,127 - RR42_RS22850 0.20 -2.5 458,181 + RR42_RS22850 0.25 +1.2 458,570 + RR42_RS22850 0.63 -0.5 458,571 - RR42_RS22850 0.63 -1.4 458,605 + RR42_RS22850 0.66 -2.4 458,606 - RR42_RS22850 0.66 -1.8 458,606 - RR42_RS22850 0.66 -0.5 458,636 + RR42_RS22850 0.69 -0.5 458,637 - RR42_RS22850 0.69 +0.9 458,765 + RR42_RS22850 0.81 -1.2 458,765 + RR42_RS22850 0.81 -0.4 458,766 - RR42_RS22850 0.82 +1.2
Or see this region's nucleotide sequence