Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22680

Experiment: L-Valine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS22675 and RR42_RS22680 are separated by 180 nucleotidesRR42_RS22680 and RR42_RS22685 are separated by 9 nucleotides RR42_RS22675: RR42_RS22675 - membrane protein, at 422,327 to 423,418 _RS22675 RR42_RS22680: RR42_RS22680 - enoyl-CoA hydratase, at 423,599 to 424,375 _RS22680 RR42_RS22685: RR42_RS22685 - ABC transporter substrate-binding protein, at 424,385 to 425,356 _RS22685 Position (kb) 423 424 425Strain fitness (log2 ratio) -2 -1 0 1 2at 422.679 kb on + strand, within RR42_RS22675at 422.680 kb on - strand, within RR42_RS22675at 422.682 kb on + strand, within RR42_RS22675at 422.683 kb on - strand, within RR42_RS22675at 422.721 kb on + strand, within RR42_RS22675at 422.722 kb on - strand, within RR42_RS22675at 422.722 kb on - strand, within RR42_RS22675at 422.826 kb on + strand, within RR42_RS22675at 422.910 kb on + strand, within RR42_RS22675at 422.910 kb on + strand, within RR42_RS22675at 422.925 kb on + strand, within RR42_RS22675at 422.925 kb on + strand, within RR42_RS22675at 423.051 kb on + strand, within RR42_RS22675at 423.052 kb on - strand, within RR42_RS22675at 423.183 kb on - strand, within RR42_RS22675at 423.188 kb on + strand, within RR42_RS22675at 423.188 kb on + strand, within RR42_RS22675at 423.316 kb on - strandat 423.433 kb on + strandat 423.481 kb on + strandat 423.482 kb on - strandat 423.489 kb on + strandat 423.490 kb on - strandat 423.490 kb on - strandat 423.579 kb on + strandat 423.579 kb on + strandat 423.579 kb on + strandat 423.586 kb on + strandat 423.600 kb on + strandat 424.174 kb on + strand, within RR42_RS22680at 424.360 kb on + strandat 424.408 kb on + strandat 424.648 kb on - strand, within RR42_RS22685at 424.648 kb on - strand, within RR42_RS22685at 424.667 kb on + strand, within RR42_RS22685at 424.667 kb on + strand, within RR42_RS22685at 424.809 kb on + strand, within RR42_RS22685at 424.809 kb on + strand, within RR42_RS22685at 424.810 kb on - strand, within RR42_RS22685at 424.810 kb on - strand, within RR42_RS22685at 424.902 kb on + strand, within RR42_RS22685at 424.903 kb on - strand, within RR42_RS22685at 424.903 kb on - strand, within RR42_RS22685at 424.903 kb on - strand, within RR42_RS22685at 425.034 kb on + strand, within RR42_RS22685at 425.034 kb on + strand, within RR42_RS22685at 425.034 kb on + strand, within RR42_RS22685at 425.128 kb on - strand, within RR42_RS22685at 425.250 kb on + strand, within RR42_RS22685at 425.283 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
remove
422,679 + RR42_RS22675 0.32 +0.1
422,680 - RR42_RS22675 0.32 -1.9
422,682 + RR42_RS22675 0.33 +0.0
422,683 - RR42_RS22675 0.33 +0.1
422,721 + RR42_RS22675 0.36 +0.0
422,722 - RR42_RS22675 0.36 +0.4
422,722 - RR42_RS22675 0.36 -0.5
422,826 + RR42_RS22675 0.46 +1.2
422,910 + RR42_RS22675 0.53 +0.4
422,910 + RR42_RS22675 0.53 -0.6
422,925 + RR42_RS22675 0.55 +1.2
422,925 + RR42_RS22675 0.55 -0.6
423,051 + RR42_RS22675 0.66 -1.6
423,052 - RR42_RS22675 0.66 +2.4
423,183 - RR42_RS22675 0.78 -0.4
423,188 + RR42_RS22675 0.79 +0.3
423,188 + RR42_RS22675 0.79 -0.3
423,316 - -0.5
423,433 + -1.0
423,481 + -0.1
423,482 - -0.1
423,489 + +0.7
423,490 - -0.7
423,490 - +0.5
423,579 + +0.2
423,579 + -1.0
423,579 + +0.5
423,586 + +0.4
423,600 + +0.2
424,174 + RR42_RS22680 0.74 +0.2
424,360 + -0.4
424,408 + -0.6
424,648 - RR42_RS22685 0.27 +0.2
424,648 - RR42_RS22685 0.27 -1.9
424,667 + RR42_RS22685 0.29 +1.2
424,667 + RR42_RS22685 0.29 +1.3
424,809 + RR42_RS22685 0.44 -0.1
424,809 + RR42_RS22685 0.44 -0.4
424,810 - RR42_RS22685 0.44 -0.5
424,810 - RR42_RS22685 0.44 -0.8
424,902 + RR42_RS22685 0.53 -0.1
424,903 - RR42_RS22685 0.53 -0.2
424,903 - RR42_RS22685 0.53 -1.8
424,903 - RR42_RS22685 0.53 +1.6
425,034 + RR42_RS22685 0.67 -0.1
425,034 + RR42_RS22685 0.67 -0.6
425,034 + RR42_RS22685 0.67 +0.6
425,128 - RR42_RS22685 0.76 -0.4
425,250 + RR42_RS22685 0.89 +0.3
425,283 + -1.4

Or see this region's nucleotide sequence