Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22615 and RR42_RS22620 are separated by 76 nucleotides RR42_RS22620 and RR42_RS22625 overlap by 1 nucleotides RR42_RS22625 and RR42_RS22630 are separated by 71 nucleotides
RR42_RS22615: RR42_RS22615 - ABC transporter substrate-binding protein, at 406,989 to 407,993
_RS22615
RR42_RS22620: RR42_RS22620 - DNA-binding protein, at 408,070 to 408,459
_RS22620
RR42_RS22625: RR42_RS22625 - thiolase, at 408,459 to 409,637
_RS22625
RR42_RS22630: RR42_RS22630 - 3-hydroxyacyl-CoA dehydrogenase, at 409,709 to 411,799
_RS22630
Position (kb) 408
409
410 Strain fitness (log2 ratio) -2
-1
0
1
2 at 407.479 kb on - strand, within RR42_RS22615 at 407.751 kb on + strand, within RR42_RS22615 at 407.751 kb on + strand, within RR42_RS22615 at 407.751 kb on + strand, within RR42_RS22615 at 407.752 kb on - strand, within RR42_RS22615 at 407.752 kb on - strand, within RR42_RS22615 at 407.779 kb on - strand, within RR42_RS22615 at 407.925 kb on + strand at 408.076 kb on - strand at 408.262 kb on + strand, within RR42_RS22620 at 408.263 kb on - strand, within RR42_RS22620 at 408.299 kb on - strand, within RR42_RS22620 at 408.435 kb on - strand at 408.682 kb on - strand, within RR42_RS22625 at 408.793 kb on + strand, within RR42_RS22625 at 408.793 kb on + strand, within RR42_RS22625 at 408.794 kb on - strand, within RR42_RS22625 at 408.880 kb on - strand, within RR42_RS22625 at 408.891 kb on + strand, within RR42_RS22625 at 408.892 kb on - strand, within RR42_RS22625 at 408.919 kb on - strand, within RR42_RS22625 at 409.183 kb on - strand, within RR42_RS22625 at 409.183 kb on - strand, within RR42_RS22625 at 409.326 kb on + strand, within RR42_RS22625 at 409.488 kb on + strand, within RR42_RS22625 at 409.488 kb on + strand, within RR42_RS22625 at 409.488 kb on + strand, within RR42_RS22625 at 409.489 kb on - strand, within RR42_RS22625 at 409.489 kb on - strand, within RR42_RS22625 at 409.610 kb on + strand at 409.611 kb on - strand at 409.651 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 407,479 - RR42_RS22615 0.49 -0.0 407,751 + RR42_RS22615 0.76 -0.0 407,751 + RR42_RS22615 0.76 +0.7 407,751 + RR42_RS22615 0.76 +0.2 407,752 - RR42_RS22615 0.76 -2.0 407,752 - RR42_RS22615 0.76 +1.2 407,779 - RR42_RS22615 0.79 -0.6 407,925 + +0.2 408,076 - -0.5 408,262 + RR42_RS22620 0.49 +0.0 408,263 - RR42_RS22620 0.49 +0.2 408,299 - RR42_RS22620 0.59 -0.2 408,435 - -1.6 408,682 - RR42_RS22625 0.19 +0.3 408,793 + RR42_RS22625 0.28 -0.0 408,793 + RR42_RS22625 0.28 -0.3 408,794 - RR42_RS22625 0.28 -1.2 408,880 - RR42_RS22625 0.36 +1.2 408,891 + RR42_RS22625 0.37 +1.8 408,892 - RR42_RS22625 0.37 -0.5 408,919 - RR42_RS22625 0.39 +0.6 409,183 - RR42_RS22625 0.61 -1.4 409,183 - RR42_RS22625 0.61 +1.2 409,326 + RR42_RS22625 0.74 -0.2 409,488 + RR42_RS22625 0.87 -0.3 409,488 + RR42_RS22625 0.87 -0.1 409,488 + RR42_RS22625 0.87 -0.8 409,489 - RR42_RS22625 0.87 -1.2 409,489 - RR42_RS22625 0.87 -0.9 409,610 + -0.1 409,611 - -0.3 409,651 + -1.3
Or see this region's nucleotide sequence