Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22625

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22615 and RR42_RS22620 are separated by 76 nucleotidesRR42_RS22620 and RR42_RS22625 overlap by 1 nucleotidesRR42_RS22625 and RR42_RS22630 are separated by 71 nucleotides RR42_RS22615: RR42_RS22615 - ABC transporter substrate-binding protein, at 406,989 to 407,993 _RS22615 RR42_RS22620: RR42_RS22620 - DNA-binding protein, at 408,070 to 408,459 _RS22620 RR42_RS22625: RR42_RS22625 - thiolase, at 408,459 to 409,637 _RS22625 RR42_RS22630: RR42_RS22630 - 3-hydroxyacyl-CoA dehydrogenase, at 409,709 to 411,799 _RS22630 Position (kb) 408 409 410Strain fitness (log2 ratio) -2 -1 0 1 2at 407.479 kb on - strand, within RR42_RS22615at 407.751 kb on + strand, within RR42_RS22615at 407.751 kb on + strand, within RR42_RS22615at 407.751 kb on + strand, within RR42_RS22615at 407.752 kb on - strand, within RR42_RS22615at 407.752 kb on - strand, within RR42_RS22615at 407.779 kb on - strand, within RR42_RS22615at 407.925 kb on + strandat 408.076 kb on - strandat 408.262 kb on + strand, within RR42_RS22620at 408.263 kb on - strand, within RR42_RS22620at 408.299 kb on - strand, within RR42_RS22620at 408.435 kb on - strandat 408.682 kb on - strand, within RR42_RS22625at 408.793 kb on + strand, within RR42_RS22625at 408.793 kb on + strand, within RR42_RS22625at 408.794 kb on - strand, within RR42_RS22625at 408.880 kb on - strand, within RR42_RS22625at 408.891 kb on + strand, within RR42_RS22625at 408.892 kb on - strand, within RR42_RS22625at 408.919 kb on - strand, within RR42_RS22625at 409.183 kb on - strand, within RR42_RS22625at 409.183 kb on - strand, within RR42_RS22625at 409.326 kb on + strand, within RR42_RS22625at 409.488 kb on + strand, within RR42_RS22625at 409.488 kb on + strand, within RR42_RS22625at 409.488 kb on + strand, within RR42_RS22625at 409.489 kb on - strand, within RR42_RS22625at 409.489 kb on - strand, within RR42_RS22625at 409.610 kb on + strandat 409.611 kb on - strandat 409.651 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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407,479 - RR42_RS22615 0.49 -0.0
407,751 + RR42_RS22615 0.76 -0.0
407,751 + RR42_RS22615 0.76 +0.7
407,751 + RR42_RS22615 0.76 +0.2
407,752 - RR42_RS22615 0.76 -2.0
407,752 - RR42_RS22615 0.76 +1.2
407,779 - RR42_RS22615 0.79 -0.6
407,925 + +0.2
408,076 - -0.5
408,262 + RR42_RS22620 0.49 +0.0
408,263 - RR42_RS22620 0.49 +0.2
408,299 - RR42_RS22620 0.59 -0.2
408,435 - -1.6
408,682 - RR42_RS22625 0.19 +0.3
408,793 + RR42_RS22625 0.28 -0.0
408,793 + RR42_RS22625 0.28 -0.3
408,794 - RR42_RS22625 0.28 -1.2
408,880 - RR42_RS22625 0.36 +1.2
408,891 + RR42_RS22625 0.37 +1.8
408,892 - RR42_RS22625 0.37 -0.5
408,919 - RR42_RS22625 0.39 +0.6
409,183 - RR42_RS22625 0.61 -1.4
409,183 - RR42_RS22625 0.61 +1.2
409,326 + RR42_RS22625 0.74 -0.2
409,488 + RR42_RS22625 0.87 -0.3
409,488 + RR42_RS22625 0.87 -0.1
409,488 + RR42_RS22625 0.87 -0.8
409,489 - RR42_RS22625 0.87 -1.2
409,489 - RR42_RS22625 0.87 -0.9
409,610 + -0.1
409,611 - -0.3
409,651 + -1.3

Or see this region's nucleotide sequence