Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21290

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21285 and RR42_RS21290 are separated by 35 nucleotidesRR42_RS21290 and RR42_RS21295 overlap by 4 nucleotidesRR42_RS21295 and RR42_RS21300 are separated by 138 nucleotides RR42_RS21285: RR42_RS21285 - L-lactate dehydrogenase, LutB subunit (from data), at 102,111 to 103,541 _RS21285 RR42_RS21290: RR42_RS21290 - L-lactate dehydrogenase, LutC subunit (from data), at 103,577 to 104,281 _RS21290 RR42_RS21295: RR42_RS21295 - L-lactate dehydrogenase, LutA subunit (from data), at 104,278 to 105,066 _RS21295 RR42_RS21300: RR42_RS21300 - GntR family transcriptional regulator, at 105,205 to 105,930 _RS21300 Position (kb) 103 104 105Strain fitness (log2 ratio) -3 -2 -1 0 1at 102.637 kb on + strand, within RR42_RS21285at 102.733 kb on + strand, within RR42_RS21285at 102.734 kb on - strand, within RR42_RS21285at 103.013 kb on - strand, within RR42_RS21285at 103.028 kb on + strand, within RR42_RS21285at 103.123 kb on + strand, within RR42_RS21285at 103.124 kb on - strand, within RR42_RS21285at 103.171 kb on + strand, within RR42_RS21285at 103.574 kb on + strandat 103.574 kb on + strandat 103.575 kb on - strandat 103.575 kb on - strandat 103.616 kb on - strandat 103.695 kb on - strand, within RR42_RS21290at 103.695 kb on - strand, within RR42_RS21290at 103.779 kb on + strand, within RR42_RS21290at 103.889 kb on - strand, within RR42_RS21290at 104.175 kb on + strand, within RR42_RS21290at 104.175 kb on + strand, within RR42_RS21290at 104.175 kb on + strand, within RR42_RS21290at 104.176 kb on - strand, within RR42_RS21290at 104.240 kb on + strandat 104.711 kb on + strand, within RR42_RS21295at 104.895 kb on + strand, within RR42_RS21295at 104.896 kb on - strand, within RR42_RS21295at 105.026 kb on + strandat 105.130 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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102,637 + RR42_RS21285 0.37 -1.8
102,733 + RR42_RS21285 0.43 +0.7
102,734 - RR42_RS21285 0.44 -1.2
103,013 - RR42_RS21285 0.63 -1.4
103,028 + RR42_RS21285 0.64 -1.4
103,123 + RR42_RS21285 0.71 -1.2
103,124 - RR42_RS21285 0.71 +1.0
103,171 + RR42_RS21285 0.74 -0.2
103,574 + -1.8
103,574 + -0.7
103,575 - -1.9
103,575 - -1.8
103,616 - -1.1
103,695 - RR42_RS21290 0.17 -0.8
103,695 - RR42_RS21290 0.17 -0.7
103,779 + RR42_RS21290 0.29 -1.0
103,889 - RR42_RS21290 0.44 +0.7
104,175 + RR42_RS21290 0.85 -2.7
104,175 + RR42_RS21290 0.85 -2.7
104,175 + RR42_RS21290 0.85 -1.6
104,176 - RR42_RS21290 0.85 -0.7
104,240 + +1.5
104,711 + RR42_RS21295 0.55 -2.5
104,895 + RR42_RS21295 0.78 -2.0
104,896 - RR42_RS21295 0.78 -1.1
105,026 + -1.3
105,130 + -3.0

Or see this region's nucleotide sequence