Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20810

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS20805 and RR42_RS20810 are separated by 128 nucleotidesRR42_RS20810 and RR42_RS20815 are separated by 255 nucleotidesRR42_RS20815 and RR42_RS20820 are separated by 65 nucleotides RR42_RS20805: RR42_RS20805 - tRNA modification GTPase TrmE, at 4,515,442 to 4,516,896 _RS20805 RR42_RS20810: RR42_RS20810 - hypothetical protein, at 4,517,025 to 4,517,795 _RS20810 RR42_RS20815: RR42_RS20815 - phenylacetic acid degradation protein PaaI, at 4,518,051 to 4,518,488 _RS20815 RR42_RS20820: RR42_RS20820 - glyoxalase, at 4,518,554 to 4,518,940 _RS20820 Position (kb) 4517 4518Strain fitness (log2 ratio) -2 -1 0 1 2at 4516.649 kb on + strand, within RR42_RS20805at 4517.123 kb on - strand, within RR42_RS20810at 4517.162 kb on - strand, within RR42_RS20810at 4517.617 kb on - strand, within RR42_RS20810at 4517.814 kb on + strandat 4517.814 kb on + strandat 4517.814 kb on + strandat 4517.815 kb on - strandat 4517.818 kb on + strandat 4517.819 kb on - strandat 4517.819 kb on - strandat 4517.829 kb on - strandat 4517.829 kb on - strandat 4517.899 kb on - strandat 4517.909 kb on + strandat 4517.918 kb on + strandat 4518.130 kb on + strand, within RR42_RS20815at 4518.130 kb on + strand, within RR42_RS20815at 4518.130 kb on + strand, within RR42_RS20815at 4518.370 kb on + strand, within RR42_RS20815at 4518.371 kb on - strand, within RR42_RS20815at 4518.608 kb on + strand, within RR42_RS20820at 4518.609 kb on - strand, within RR42_RS20820at 4518.609 kb on - strand, within RR42_RS20820at 4518.609 kb on - strand, within RR42_RS20820

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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4,516,649 + RR42_RS20805 0.83 -2.6
4,517,123 - RR42_RS20810 0.13 -0.2
4,517,162 - RR42_RS20810 0.18 +0.4
4,517,617 - RR42_RS20810 0.77 +0.7
4,517,814 + +0.2
4,517,814 + -0.1
4,517,814 + -0.5
4,517,815 - -0.2
4,517,818 + +0.9
4,517,819 - -0.1
4,517,819 - +0.7
4,517,829 - -0.5
4,517,829 - -1.2
4,517,899 - -0.4
4,517,909 + +0.0
4,517,918 + +0.0
4,518,130 + RR42_RS20815 0.18 -0.2
4,518,130 + RR42_RS20815 0.18 -0.3
4,518,130 + RR42_RS20815 0.18 +2.0
4,518,370 + RR42_RS20815 0.73 -0.2
4,518,371 - RR42_RS20815 0.73 +1.1
4,518,608 + RR42_RS20820 0.14 -0.6
4,518,609 - RR42_RS20820 0.14 +0.3
4,518,609 - RR42_RS20820 0.14 +0.1
4,518,609 - RR42_RS20820 0.14 -1.8

Or see this region's nucleotide sequence