Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20520 and RR42_RS20525 are separated by 17 nucleotides RR42_RS20525 and RR42_RS20530 are separated by 70 nucleotides RR42_RS20530 and RR42_RS20535 are separated by 568 nucleotides
RR42_RS20520: RR42_RS20520 - histidine kinase, at 4,446,404 to 4,447,810
_RS20520
RR42_RS20525: RR42_RS20525 - LuxR family transcriptional regulator, at 4,447,828 to 4,448,496
_RS20525
RR42_RS20530: RR42_RS20530 - phosphoenolpyruvate carboxykinase, at 4,448,567 to 4,450,423
_RS20530
RR42_RS20535: RR42_RS20535 - 3-phosphoglycerate dehydrogenase, at 4,450,992 to 4,452,005
_RS20535
Position (kb) 4448
4449
4450
4451 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4447.706 kb on - strand at 4448.116 kb on + strand, within RR42_RS20525 at 4448.117 kb on - strand, within RR42_RS20525 at 4448.117 kb on - strand, within RR42_RS20525 at 4448.117 kb on - strand, within RR42_RS20525 at 4448.117 kb on - strand, within RR42_RS20525 at 4448.117 kb on - strand, within RR42_RS20525 at 4448.117 kb on - strand, within RR42_RS20525 at 4448.153 kb on - strand, within RR42_RS20525 at 4448.224 kb on + strand, within RR42_RS20525 at 4448.224 kb on + strand, within RR42_RS20525 at 4448.224 kb on + strand, within RR42_RS20525 at 4448.224 kb on + strand, within RR42_RS20525 at 4448.225 kb on - strand, within RR42_RS20525 at 4448.225 kb on - strand, within RR42_RS20525 at 4448.225 kb on - strand, within RR42_RS20525 at 4448.564 kb on + strand at 4448.564 kb on + strand at 4448.565 kb on - strand at 4448.565 kb on - strand at 4448.568 kb on + strand at 4448.569 kb on - strand at 4448.901 kb on + strand, within RR42_RS20530 at 4448.901 kb on + strand, within RR42_RS20530 at 4448.901 kb on + strand, within RR42_RS20530 at 4448.902 kb on - strand, within RR42_RS20530 at 4448.902 kb on - strand, within RR42_RS20530 at 4448.902 kb on - strand, within RR42_RS20530 at 4448.902 kb on - strand, within RR42_RS20530 at 4448.967 kb on + strand, within RR42_RS20530 at 4448.967 kb on + strand, within RR42_RS20530 at 4448.968 kb on - strand, within RR42_RS20530 at 4448.968 kb on - strand, within RR42_RS20530 at 4449.081 kb on + strand, within RR42_RS20530 at 4449.081 kb on + strand, within RR42_RS20530 at 4449.081 kb on + strand, within RR42_RS20530 at 4449.082 kb on - strand, within RR42_RS20530 at 4449.082 kb on - strand, within RR42_RS20530 at 4449.082 kb on - strand, within RR42_RS20530 at 4449.082 kb on - strand, within RR42_RS20530 at 4449.082 kb on - strand, within RR42_RS20530 at 4449.082 kb on - strand, within RR42_RS20530 at 4449.190 kb on + strand, within RR42_RS20530 at 4449.190 kb on + strand, within RR42_RS20530 at 4449.191 kb on - strand, within RR42_RS20530 at 4449.404 kb on - strand, within RR42_RS20530 at 4449.624 kb on + strand, within RR42_RS20530 at 4449.624 kb on + strand, within RR42_RS20530 at 4449.624 kb on + strand, within RR42_RS20530 at 4449.624 kb on + strand, within RR42_RS20530 at 4449.765 kb on + strand, within RR42_RS20530 at 4449.765 kb on + strand, within RR42_RS20530 at 4449.765 kb on + strand, within RR42_RS20530 at 4449.766 kb on - strand, within RR42_RS20530 at 4449.766 kb on - strand, within RR42_RS20530 at 4449.804 kb on + strand, within RR42_RS20530 at 4449.804 kb on + strand, within RR42_RS20530 at 4449.804 kb on + strand, within RR42_RS20530 at 4449.805 kb on - strand, within RR42_RS20530 at 4449.805 kb on - strand, within RR42_RS20530 at 4449.805 kb on - strand, within RR42_RS20530 at 4449.805 kb on - strand, within RR42_RS20530 at 4449.946 kb on + strand, within RR42_RS20530 at 4449.946 kb on + strand, within RR42_RS20530 at 4449.946 kb on + strand, within RR42_RS20530 at 4449.946 kb on + strand, within RR42_RS20530 at 4449.946 kb on + strand, within RR42_RS20530 at 4449.947 kb on - strand, within RR42_RS20530 at 4449.947 kb on - strand, within RR42_RS20530 at 4449.961 kb on - strand, within RR42_RS20530 at 4449.961 kb on - strand, within RR42_RS20530 at 4449.961 kb on - strand, within RR42_RS20530 at 4450.035 kb on + strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.278 kb on + strand at 4450.278 kb on + strand at 4450.278 kb on + strand at 4450.278 kb on + strand at 4450.279 kb on - strand at 4450.279 kb on - strand at 4450.305 kb on + strand at 4450.305 kb on + strand at 4450.305 kb on + strand at 4450.305 kb on + strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.309 kb on + strand at 4450.309 kb on + strand at 4450.309 kb on + strand at 4450.309 kb on + strand at 4450.309 kb on + strand at 4450.309 kb on + strand at 4450.310 kb on - strand at 4450.310 kb on - strand at 4450.310 kb on - strand at 4450.310 kb on - strand at 4450.310 kb on - strand at 4450.383 kb on - strand at 4450.423 kb on + strand at 4450.423 kb on + strand at 4450.423 kb on + strand at 4450.423 kb on + strand at 4450.424 kb on - strand at 4450.424 kb on - strand at 4450.424 kb on - strand at 4450.424 kb on - strand at 4450.429 kb on + strand at 4450.429 kb on + strand at 4450.430 kb on - strand at 4450.430 kb on - strand at 4450.430 kb on - strand at 4450.442 kb on - strand at 4450.587 kb on + strand at 4450.587 kb on + strand at 4450.756 kb on + strand at 4450.757 kb on - strand at 4450.824 kb on - strand at 4450.824 kb on - strand at 4450.919 kb on + strand at 4450.919 kb on + strand at 4450.920 kb on - strand at 4450.920 kb on - strand at 4450.920 kb on - strand at 4450.925 kb on + strand at 4450.926 kb on - strand at 4450.926 kb on - strand at 4450.926 kb on - strand at 4450.927 kb on + strand at 4450.981 kb on + strand at 4450.981 kb on + strand at 4451.006 kb on - strand at 4451.016 kb on + strand at 4451.017 kb on - strand at 4451.148 kb on - strand, within RR42_RS20535 at 4451.255 kb on + strand, within RR42_RS20535 at 4451.256 kb on - strand, within RR42_RS20535 at 4451.256 kb on - strand, within RR42_RS20535 at 4451.358 kb on + strand, within RR42_RS20535 at 4451.358 kb on + strand, within RR42_RS20535 at 4451.359 kb on - strand, within RR42_RS20535 at 4451.359 kb on - strand, within RR42_RS20535
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 4,447,706 - +0.7 4,448,116 + RR42_RS20525 0.43 +0.8 4,448,117 - RR42_RS20525 0.43 +0.1 4,448,117 - RR42_RS20525 0.43 +0.3 4,448,117 - RR42_RS20525 0.43 -0.2 4,448,117 - RR42_RS20525 0.43 +0.9 4,448,117 - RR42_RS20525 0.43 +0.9 4,448,117 - RR42_RS20525 0.43 +1.0 4,448,153 - RR42_RS20525 0.49 -1.2 4,448,224 + RR42_RS20525 0.59 +1.0 4,448,224 + RR42_RS20525 0.59 +0.3 4,448,224 + RR42_RS20525 0.59 +0.9 4,448,224 + RR42_RS20525 0.59 +1.0 4,448,225 - RR42_RS20525 0.59 +0.3 4,448,225 - RR42_RS20525 0.59 -0.6 4,448,225 - RR42_RS20525 0.59 +0.1 4,448,564 + +1.1 4,448,564 + +0.8 4,448,565 - -1.8 4,448,565 - -0.2 4,448,568 + +0.1 4,448,569 - -0.5 4,448,901 + RR42_RS20530 0.18 +0.8 4,448,901 + RR42_RS20530 0.18 +0.7 4,448,901 + RR42_RS20530 0.18 +0.8 4,448,902 - RR42_RS20530 0.18 -0.3 4,448,902 - RR42_RS20530 0.18 +1.3 4,448,902 - RR42_RS20530 0.18 +0.4 4,448,902 - RR42_RS20530 0.18 +1.4 4,448,967 + RR42_RS20530 0.22 -1.1 4,448,967 + RR42_RS20530 0.22 -1.2 4,448,968 - RR42_RS20530 0.22 +1.0 4,448,968 - RR42_RS20530 0.22 +0.8 4,449,081 + RR42_RS20530 0.28 +0.1 4,449,081 + RR42_RS20530 0.28 +0.7 4,449,081 + RR42_RS20530 0.28 -0.6 4,449,082 - RR42_RS20530 0.28 +0.5 4,449,082 - RR42_RS20530 0.28 +0.2 4,449,082 - RR42_RS20530 0.28 +0.6 4,449,082 - RR42_RS20530 0.28 +0.0 4,449,082 - RR42_RS20530 0.28 +0.4 4,449,082 - RR42_RS20530 0.28 +0.9 4,449,190 + RR42_RS20530 0.34 +0.4 4,449,190 + RR42_RS20530 0.34 +1.6 4,449,191 - RR42_RS20530 0.34 +1.4 4,449,404 - RR42_RS20530 0.45 +0.6 4,449,624 + RR42_RS20530 0.57 +0.5 4,449,624 + RR42_RS20530 0.57 +0.2 4,449,624 + RR42_RS20530 0.57 +1.0 4,449,624 + RR42_RS20530 0.57 +1.2 4,449,765 + RR42_RS20530 0.65 +0.3 4,449,765 + RR42_RS20530 0.65 +1.6 4,449,765 + RR42_RS20530 0.65 +0.7 4,449,766 - RR42_RS20530 0.65 +0.7 4,449,766 - RR42_RS20530 0.65 +1.1 4,449,804 + RR42_RS20530 0.67 -0.6 4,449,804 + RR42_RS20530 0.67 +0.1 4,449,804 + RR42_RS20530 0.67 +1.0 4,449,805 - RR42_RS20530 0.67 +1.8 4,449,805 - RR42_RS20530 0.67 +0.2 4,449,805 - RR42_RS20530 0.67 +0.8 4,449,805 - RR42_RS20530 0.67 +1.0 4,449,946 + RR42_RS20530 0.74 +0.7 4,449,946 + RR42_RS20530 0.74 -0.3 4,449,946 + RR42_RS20530 0.74 +0.0 4,449,946 + RR42_RS20530 0.74 +0.3 4,449,946 + RR42_RS20530 0.74 +0.6 4,449,947 - RR42_RS20530 0.74 +0.3 4,449,947 - RR42_RS20530 0.74 +0.4 4,449,961 - RR42_RS20530 0.75 -1.4 4,449,961 - RR42_RS20530 0.75 +1.3 4,449,961 - RR42_RS20530 0.75 +0.4 4,450,035 + RR42_RS20530 0.79 -0.2 4,450,036 - RR42_RS20530 0.79 -1.2 4,450,036 - RR42_RS20530 0.79 +0.9 4,450,036 - RR42_RS20530 0.79 +1.2 4,450,036 - RR42_RS20530 0.79 +1.2 4,450,036 - RR42_RS20530 0.79 +0.4 4,450,036 - RR42_RS20530 0.79 -0.5 4,450,036 - RR42_RS20530 0.79 -0.6 4,450,278 + -0.0 4,450,278 + +0.1 4,450,278 + -0.4 4,450,278 + +0.5 4,450,279 - +0.1 4,450,279 - +1.3 4,450,305 + +0.1 4,450,305 + +0.1 4,450,305 + +0.3 4,450,305 + +0.7 4,450,306 - +1.0 4,450,306 - -0.3 4,450,306 - +0.6 4,450,306 - +1.2 4,450,306 - +1.0 4,450,306 - +0.5 4,450,306 - +0.7 4,450,306 - +1.0 4,450,309 + +0.7 4,450,309 + +0.3 4,450,309 + +0.5 4,450,309 + +0.5 4,450,309 + +0.6 4,450,309 + +0.4 4,450,310 - +1.2 4,450,310 - +0.2 4,450,310 - +0.9 4,450,310 - +1.2 4,450,310 - +0.3 4,450,383 - +0.1 4,450,423 + +1.0 4,450,423 + +1.4 4,450,423 + -1.0 4,450,423 + +1.5 4,450,424 - +0.4 4,450,424 - -0.3 4,450,424 - -0.3 4,450,424 - +0.1 4,450,429 + +1.0 4,450,429 + +1.0 4,450,430 - -0.9 4,450,430 - -0.7 4,450,430 - -0.1 4,450,442 - +0.1 4,450,587 + +0.8 4,450,587 + -0.0 4,450,756 + +0.7 4,450,757 - -1.1 4,450,824 - -0.9 4,450,824 - -0.0 4,450,919 + -1.4 4,450,919 + +0.2 4,450,920 - -0.8 4,450,920 - -1.6 4,450,920 - -1.2 4,450,925 + +0.7 4,450,926 - -0.4 4,450,926 - -0.3 4,450,926 - +0.4 4,450,927 + -0.0 4,450,981 + -0.3 4,450,981 + +0.6 4,451,006 - -1.5 4,451,016 + +1.4 4,451,017 - -1.1 4,451,148 - RR42_RS20535 0.15 +0.1 4,451,255 + RR42_RS20535 0.26 +0.5 4,451,256 - RR42_RS20535 0.26 -0.9 4,451,256 - RR42_RS20535 0.26 +0.5 4,451,358 + RR42_RS20535 0.36 -1.6 4,451,358 + RR42_RS20535 0.36 +0.1 4,451,359 - RR42_RS20535 0.36 -0.2 4,451,359 - RR42_RS20535 0.36 -1.5
Or see this region's nucleotide sequence