Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19825

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19815 and RR42_RS19820 are separated by 67 nucleotidesRR42_RS19820 and RR42_RS19825 overlap by 4 nucleotidesRR42_RS19825 and RR42_RS19830 are separated by 188 nucleotides RR42_RS19815: RR42_RS19815 - enoyl-CoA hydratase, at 4,277,229 to 4,278,047 _RS19815 RR42_RS19820: RR42_RS19820 - membrane protein, at 4,278,115 to 4,278,498 _RS19820 RR42_RS19825: RR42_RS19825 - LysR family transcriptional regulator, at 4,278,495 to 4,279,412 _RS19825 RR42_RS19830: RR42_RS19830 - LysR family transcriptional regulator, at 4,279,601 to 4,280,539 _RS19830 Position (kb) 4278 4279 4280Strain fitness (log2 ratio) -1 0 1at 4278.046 kb on - strandat 4278.046 kb on - strandat 4278.155 kb on + strand, within RR42_RS19820at 4278.240 kb on - strand, within RR42_RS19820at 4278.258 kb on - strand, within RR42_RS19820at 4278.281 kb on + strand, within RR42_RS19820at 4278.281 kb on + strand, within RR42_RS19820at 4278.447 kb on + strand, within RR42_RS19820at 4278.448 kb on - strand, within RR42_RS19820at 4278.558 kb on - strandat 4278.805 kb on + strand, within RR42_RS19825at 4278.997 kb on + strand, within RR42_RS19825at 4278.997 kb on + strand, within RR42_RS19825at 4279.383 kb on - strandat 4279.401 kb on + strandat 4279.402 kb on - strandat 4279.475 kb on - strandat 4279.497 kb on + strandat 4279.658 kb on + strandat 4279.658 kb on + strandat 4279.737 kb on - strand, within RR42_RS19830at 4280.361 kb on + strand, within RR42_RS19830at 4280.362 kb on - strand, within RR42_RS19830

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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4,278,046 - +0.1
4,278,046 - +0.4
4,278,155 + RR42_RS19820 0.10 -1.4
4,278,240 - RR42_RS19820 0.33 -1.6
4,278,258 - RR42_RS19820 0.37 +0.5
4,278,281 + RR42_RS19820 0.43 +0.2
4,278,281 + RR42_RS19820 0.43 +0.3
4,278,447 + RR42_RS19820 0.86 -0.5
4,278,448 - RR42_RS19820 0.87 -0.0
4,278,558 - -0.2
4,278,805 + RR42_RS19825 0.34 -1.1
4,278,997 + RR42_RS19825 0.55 -0.7
4,278,997 + RR42_RS19825 0.55 -1.6
4,279,383 - +1.0
4,279,401 + -0.3
4,279,402 - -0.3
4,279,475 - -0.4
4,279,497 + -0.1
4,279,658 + +0.1
4,279,658 + -0.7
4,279,737 - RR42_RS19830 0.14 -0.8
4,280,361 + RR42_RS19830 0.81 +1.2
4,280,362 - RR42_RS19830 0.81 +0.3

Or see this region's nucleotide sequence