Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS18900 and RR42_RS18905 are separated by 122 nucleotides RR42_RS18905 and RR42_RS18910 are separated by 4 nucleotides RR42_RS18910 and RR42_RS18915 are separated by 88 nucleotides
RR42_RS18900: RR42_RS18900 - membrane protein, at 4,093,357 to 4,093,980
_RS18900
RR42_RS18905: RR42_RS18905 - imidazoleglycerol-phosphate dehydratase, at 4,094,103 to 4,094,696
_RS18905
RR42_RS18910: RR42_RS18910 - histidinol-phosphate aminotransferase, at 4,094,701 to 4,095,801
_RS18910
RR42_RS18915: RR42_RS18915 - histidinol dehydrogenase, at 4,095,890 to 4,097,227
_RS18915
Position (kb)
4094
4095
4096 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4093.785 kb on + strand, within RR42_RS18900 at 4093.785 kb on + strand, within RR42_RS18900 at 4093.785 kb on + strand, within RR42_RS18900 at 4093.786 kb on - strand, within RR42_RS18900 at 4093.869 kb on + strand, within RR42_RS18900 at 4093.869 kb on + strand, within RR42_RS18900 at 4093.869 kb on + strand, within RR42_RS18900 at 4093.869 kb on + strand, within RR42_RS18900 at 4093.870 kb on - strand, within RR42_RS18900 at 4093.870 kb on - strand, within RR42_RS18900 at 4093.870 kb on - strand, within RR42_RS18900 at 4093.870 kb on - strand, within RR42_RS18900 at 4093.870 kb on - strand, within RR42_RS18900 at 4093.968 kb on + strand at 4093.968 kb on + strand at 4093.968 kb on + strand at 4093.969 kb on - strand at 4093.969 kb on - strand at 4093.969 kb on - strand at 4093.969 kb on - strand at 4093.969 kb on - strand at 4093.975 kb on - strand at 4093.975 kb on - strand at 4093.991 kb on + strand at 4093.991 kb on + strand at 4093.992 kb on - strand at 4093.992 kb on - strand at 4095.895 kb on + strand at 4095.895 kb on + strand at 4095.896 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 4,093,785 + RR42_RS18900 0.69 +0.7 4,093,785 + RR42_RS18900 0.69 -0.6 4,093,785 + RR42_RS18900 0.69 +1.1 4,093,786 - RR42_RS18900 0.69 -0.8 4,093,869 + RR42_RS18900 0.82 -1.8 4,093,869 + RR42_RS18900 0.82 -0.5 4,093,869 + RR42_RS18900 0.82 -1.3 4,093,869 + RR42_RS18900 0.82 -1.8 4,093,870 - RR42_RS18900 0.82 +0.1 4,093,870 - RR42_RS18900 0.82 +0.8 4,093,870 - RR42_RS18900 0.82 +0.1 4,093,870 - RR42_RS18900 0.82 -0.9 4,093,870 - RR42_RS18900 0.82 +0.2 4,093,968 + +0.2 4,093,968 + -0.9 4,093,968 + -0.6 4,093,969 - +0.2 4,093,969 - -1.6 4,093,969 - -2.7 4,093,969 - -0.8 4,093,969 - -1.0 4,093,975 - +2.0 4,093,975 - -0.7 4,093,991 + -0.7 4,093,991 + -1.5 4,093,992 - -1.3 4,093,992 - -0.7 4,095,895 + -2.5 4,095,895 + -1.4 4,095,896 - -0.2
Or see this region's nucleotide sequence