Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS16585 and RR42_RS16590 are separated by 70 nucleotides RR42_RS16590 and RR42_RS16595 are separated by 74 nucleotides RR42_RS16595 and RR42_RS16600 overlap by 4 nucleotides
RR42_RS16585: RR42_RS16585 - hypothetical protein, at 3,594,819 to 3,595,439
_RS16585
RR42_RS16590: RR42_RS16590 - hypothetical protein, at 3,595,510 to 3,596,190
_RS16590
RR42_RS16595: RR42_RS16595 - thiolase, at 3,596,265 to 3,597,503
_RS16595
RR42_RS16600: RR42_RS16600 - AMP-dependent synthetase, at 3,597,500 to 3,599,104
_RS16600
Position (kb)
3596
3597
3598 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3595.295 kb on + strand, within RR42_RS16585 at 3595.313 kb on + strand, within RR42_RS16585 at 3595.313 kb on + strand, within RR42_RS16585 at 3595.314 kb on - strand, within RR42_RS16585 at 3595.381 kb on + strand at 3595.382 kb on - strand at 3595.492 kb on + strand at 3595.493 kb on - strand at 3595.515 kb on + strand at 3595.515 kb on + strand at 3595.515 kb on + strand at 3595.648 kb on + strand, within RR42_RS16590 at 3595.723 kb on + strand, within RR42_RS16590 at 3595.740 kb on + strand, within RR42_RS16590 at 3595.986 kb on + strand, within RR42_RS16590 at 3595.987 kb on - strand, within RR42_RS16590 at 3596.241 kb on - strand at 3596.275 kb on + strand at 3596.277 kb on + strand at 3596.277 kb on + strand at 3596.279 kb on + strand at 3596.280 kb on - strand at 3596.407 kb on - strand, within RR42_RS16595 at 3596.431 kb on + strand, within RR42_RS16595 at 3596.431 kb on + strand, within RR42_RS16595 at 3596.431 kb on + strand, within RR42_RS16595 at 3596.432 kb on - strand, within RR42_RS16595 at 3596.467 kb on + strand, within RR42_RS16595 at 3596.467 kb on + strand, within RR42_RS16595 at 3596.507 kb on + strand, within RR42_RS16595 at 3596.613 kb on + strand, within RR42_RS16595 at 3596.613 kb on + strand, within RR42_RS16595 at 3596.616 kb on - strand, within RR42_RS16595 at 3596.624 kb on + strand, within RR42_RS16595 at 3596.705 kb on + strand, within RR42_RS16595 at 3596.706 kb on - strand, within RR42_RS16595 at 3596.776 kb on - strand, within RR42_RS16595 at 3596.776 kb on - strand, within RR42_RS16595 at 3596.776 kb on - strand, within RR42_RS16595 at 3596.776 kb on - strand, within RR42_RS16595 at 3596.917 kb on + strand, within RR42_RS16595 at 3596.932 kb on + strand, within RR42_RS16595 at 3596.993 kb on - strand, within RR42_RS16595 at 3597.046 kb on + strand, within RR42_RS16595 at 3597.065 kb on + strand, within RR42_RS16595 at 3597.078 kb on + strand, within RR42_RS16595 at 3597.108 kb on + strand, within RR42_RS16595 at 3597.126 kb on + strand, within RR42_RS16595 at 3597.163 kb on + strand, within RR42_RS16595 at 3597.164 kb on - strand, within RR42_RS16595 at 3597.164 kb on - strand, within RR42_RS16595 at 3597.172 kb on + strand, within RR42_RS16595 at 3597.204 kb on + strand, within RR42_RS16595 at 3597.207 kb on + strand, within RR42_RS16595 at 3597.207 kb on + strand, within RR42_RS16595 at 3597.207 kb on + strand, within RR42_RS16595 at 3597.207 kb on + strand, within RR42_RS16595 at 3597.208 kb on - strand, within RR42_RS16595 at 3597.208 kb on - strand, within RR42_RS16595 at 3597.208 kb on - strand, within RR42_RS16595 at 3597.329 kb on + strand, within RR42_RS16595 at 3597.329 kb on + strand, within RR42_RS16595 at 3597.330 kb on - strand, within RR42_RS16595 at 3597.364 kb on + strand, within RR42_RS16595 at 3597.617 kb on + strand at 3597.618 kb on - strand at 3597.618 kb on - strand at 3597.667 kb on + strand, within RR42_RS16600 at 3597.735 kb on + strand, within RR42_RS16600 at 3597.735 kb on + strand, within RR42_RS16600 at 3597.736 kb on - strand, within RR42_RS16600 at 3597.852 kb on - strand, within RR42_RS16600 at 3597.852 kb on - strand, within RR42_RS16600 at 3597.876 kb on + strand, within RR42_RS16600 at 3597.876 kb on + strand, within RR42_RS16600 at 3597.961 kb on - strand, within RR42_RS16600 at 3597.961 kb on - strand, within RR42_RS16600 at 3597.980 kb on + strand, within RR42_RS16600 at 3597.981 kb on - strand, within RR42_RS16600 at 3598.073 kb on - strand, within RR42_RS16600 at 3598.073 kb on - strand, within RR42_RS16600 at 3598.094 kb on + strand, within RR42_RS16600 at 3598.094 kb on + strand, within RR42_RS16600 at 3598.094 kb on + strand, within RR42_RS16600 at 3598.094 kb on + strand, within RR42_RS16600 at 3598.137 kb on + strand, within RR42_RS16600 at 3598.138 kb on - strand, within RR42_RS16600 at 3598.138 kb on - strand, within RR42_RS16600 at 3598.138 kb on - strand, within RR42_RS16600 at 3598.273 kb on + strand, within RR42_RS16600 at 3598.273 kb on + strand, within RR42_RS16600 at 3598.274 kb on - strand, within RR42_RS16600 at 3598.274 kb on - strand, within RR42_RS16600 at 3598.291 kb on + strand, within RR42_RS16600 at 3598.292 kb on - strand, within RR42_RS16600 at 3598.292 kb on - strand, within RR42_RS16600 at 3598.300 kb on + strand, within RR42_RS16600 at 3598.301 kb on - strand, within RR42_RS16600 at 3598.301 kb on - strand, within RR42_RS16600 at 3598.329 kb on + strand, within RR42_RS16600 at 3598.329 kb on + strand, within RR42_RS16600 at 3598.329 kb on + strand, within RR42_RS16600 at 3598.329 kb on + strand, within RR42_RS16600 at 3598.329 kb on + strand, within RR42_RS16600 at 3598.331 kb on + strand, within RR42_RS16600 at 3598.332 kb on - strand, within RR42_RS16600 at 3598.454 kb on + strand, within RR42_RS16600 at 3598.455 kb on - strand, within RR42_RS16600
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 3,595,295 + RR42_RS16585 0.77 -0.7 3,595,313 + RR42_RS16585 0.80 +0.5 3,595,313 + RR42_RS16585 0.80 +0.3 3,595,314 - RR42_RS16585 0.80 -0.0 3,595,381 + -1.4 3,595,382 - -2.1 3,595,492 + -0.0 3,595,493 - +1.6 3,595,515 + -0.7 3,595,515 + -0.5 3,595,515 + -0.7 3,595,648 + RR42_RS16590 0.20 -0.8 3,595,723 + RR42_RS16590 0.31 -1.3 3,595,740 + RR42_RS16590 0.34 +1.5 3,595,986 + RR42_RS16590 0.70 +0.9 3,595,987 - RR42_RS16590 0.70 +0.1 3,596,241 - -0.4 3,596,275 + -0.2 3,596,277 + +0.0 3,596,277 + +0.1 3,596,279 + +0.6 3,596,280 - +0.9 3,596,407 - RR42_RS16595 0.11 +0.3 3,596,431 + RR42_RS16595 0.13 -0.4 3,596,431 + RR42_RS16595 0.13 +1.7 3,596,431 + RR42_RS16595 0.13 -0.1 3,596,432 - RR42_RS16595 0.13 +0.8 3,596,467 + RR42_RS16595 0.16 +0.1 3,596,467 + RR42_RS16595 0.16 -0.2 3,596,507 + RR42_RS16595 0.20 +0.1 3,596,613 + RR42_RS16595 0.28 -0.6 3,596,613 + RR42_RS16595 0.28 +0.5 3,596,616 - RR42_RS16595 0.28 -1.7 3,596,624 + RR42_RS16595 0.29 +0.6 3,596,705 + RR42_RS16595 0.36 -0.7 3,596,706 - RR42_RS16595 0.36 +0.2 3,596,776 - RR42_RS16595 0.41 -0.3 3,596,776 - RR42_RS16595 0.41 +1.3 3,596,776 - RR42_RS16595 0.41 +2.2 3,596,776 - RR42_RS16595 0.41 -1.3 3,596,917 + RR42_RS16595 0.53 -0.1 3,596,932 + RR42_RS16595 0.54 +0.0 3,596,993 - RR42_RS16595 0.59 +0.3 3,597,046 + RR42_RS16595 0.63 +1.5 3,597,065 + RR42_RS16595 0.65 +1.1 3,597,078 + RR42_RS16595 0.66 +2.1 3,597,108 + RR42_RS16595 0.68 -0.3 3,597,126 + RR42_RS16595 0.69 +0.1 3,597,163 + RR42_RS16595 0.72 +0.1 3,597,164 - RR42_RS16595 0.73 -0.5 3,597,164 - RR42_RS16595 0.73 -1.0 3,597,172 + RR42_RS16595 0.73 +0.5 3,597,204 + RR42_RS16595 0.76 -0.5 3,597,207 + RR42_RS16595 0.76 -0.6 3,597,207 + RR42_RS16595 0.76 +0.4 3,597,207 + RR42_RS16595 0.76 -0.2 3,597,207 + RR42_RS16595 0.76 -0.1 3,597,208 - RR42_RS16595 0.76 -0.7 3,597,208 - RR42_RS16595 0.76 -1.0 3,597,208 - RR42_RS16595 0.76 -1.2 3,597,329 + RR42_RS16595 0.86 +0.1 3,597,329 + RR42_RS16595 0.86 +0.4 3,597,330 - RR42_RS16595 0.86 -0.0 3,597,364 + RR42_RS16595 0.89 +0.1 3,597,617 + -0.4 3,597,618 - -0.4 3,597,618 - -0.5 3,597,667 + RR42_RS16600 0.10 -0.5 3,597,735 + RR42_RS16600 0.15 +1.0 3,597,735 + RR42_RS16600 0.15 -0.9 3,597,736 - RR42_RS16600 0.15 +1.1 3,597,852 - RR42_RS16600 0.22 -0.1 3,597,852 - RR42_RS16600 0.22 +1.1 3,597,876 + RR42_RS16600 0.23 -0.5 3,597,876 + RR42_RS16600 0.23 -0.3 3,597,961 - RR42_RS16600 0.29 -3.4 3,597,961 - RR42_RS16600 0.29 -0.1 3,597,980 + RR42_RS16600 0.30 -0.5 3,597,981 - RR42_RS16600 0.30 -0.2 3,598,073 - RR42_RS16600 0.36 +0.4 3,598,073 - RR42_RS16600 0.36 -0.9 3,598,094 + RR42_RS16600 0.37 +0.1 3,598,094 + RR42_RS16600 0.37 +0.4 3,598,094 + RR42_RS16600 0.37 -0.6 3,598,094 + RR42_RS16600 0.37 +0.2 3,598,137 + RR42_RS16600 0.40 +1.0 3,598,138 - RR42_RS16600 0.40 +0.1 3,598,138 - RR42_RS16600 0.40 +0.4 3,598,138 - RR42_RS16600 0.40 +0.9 3,598,273 + RR42_RS16600 0.48 -0.5 3,598,273 + RR42_RS16600 0.48 +0.4 3,598,274 - RR42_RS16600 0.48 -0.4 3,598,274 - RR42_RS16600 0.48 -0.3 3,598,291 + RR42_RS16600 0.49 +0.8 3,598,292 - RR42_RS16600 0.49 +0.8 3,598,292 - RR42_RS16600 0.49 +0.0 3,598,300 + RR42_RS16600 0.50 +0.3 3,598,301 - RR42_RS16600 0.50 +2.9 3,598,301 - RR42_RS16600 0.50 +0.7 3,598,329 + RR42_RS16600 0.52 +1.1 3,598,329 + RR42_RS16600 0.52 -2.0 3,598,329 + RR42_RS16600 0.52 +0.2 3,598,329 + RR42_RS16600 0.52 +0.4 3,598,329 + RR42_RS16600 0.52 +0.2 3,598,331 + RR42_RS16600 0.52 -1.0 3,598,332 - RR42_RS16600 0.52 -0.3 3,598,454 + RR42_RS16600 0.59 -0.3 3,598,455 - RR42_RS16600 0.60 +0.4
Or see this region's nucleotide sequence