Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16595

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16585 and RR42_RS16590 are separated by 70 nucleotidesRR42_RS16590 and RR42_RS16595 are separated by 74 nucleotidesRR42_RS16595 and RR42_RS16600 overlap by 4 nucleotides RR42_RS16585: RR42_RS16585 - hypothetical protein, at 3,594,819 to 3,595,439 _RS16585 RR42_RS16590: RR42_RS16590 - hypothetical protein, at 3,595,510 to 3,596,190 _RS16590 RR42_RS16595: RR42_RS16595 - thiolase, at 3,596,265 to 3,597,503 _RS16595 RR42_RS16600: RR42_RS16600 - AMP-dependent synthetase, at 3,597,500 to 3,599,104 _RS16600 Position (kb) 3596 3597 3598Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3595.295 kb on + strand, within RR42_RS16585at 3595.313 kb on + strand, within RR42_RS16585at 3595.313 kb on + strand, within RR42_RS16585at 3595.314 kb on - strand, within RR42_RS16585at 3595.381 kb on + strandat 3595.382 kb on - strandat 3595.492 kb on + strandat 3595.493 kb on - strandat 3595.515 kb on + strandat 3595.515 kb on + strandat 3595.515 kb on + strandat 3595.648 kb on + strand, within RR42_RS16590at 3595.723 kb on + strand, within RR42_RS16590at 3595.740 kb on + strand, within RR42_RS16590at 3595.986 kb on + strand, within RR42_RS16590at 3595.987 kb on - strand, within RR42_RS16590at 3596.241 kb on - strandat 3596.275 kb on + strandat 3596.277 kb on + strandat 3596.277 kb on + strandat 3596.279 kb on + strandat 3596.280 kb on - strandat 3596.407 kb on - strand, within RR42_RS16595at 3596.431 kb on + strand, within RR42_RS16595at 3596.431 kb on + strand, within RR42_RS16595at 3596.431 kb on + strand, within RR42_RS16595at 3596.432 kb on - strand, within RR42_RS16595at 3596.467 kb on + strand, within RR42_RS16595at 3596.467 kb on + strand, within RR42_RS16595at 3596.507 kb on + strand, within RR42_RS16595at 3596.613 kb on + strand, within RR42_RS16595at 3596.613 kb on + strand, within RR42_RS16595at 3596.616 kb on - strand, within RR42_RS16595at 3596.624 kb on + strand, within RR42_RS16595at 3596.705 kb on + strand, within RR42_RS16595at 3596.706 kb on - strand, within RR42_RS16595at 3596.776 kb on - strand, within RR42_RS16595at 3596.776 kb on - strand, within RR42_RS16595at 3596.776 kb on - strand, within RR42_RS16595at 3596.776 kb on - strand, within RR42_RS16595at 3596.917 kb on + strand, within RR42_RS16595at 3596.932 kb on + strand, within RR42_RS16595at 3596.993 kb on - strand, within RR42_RS16595at 3597.046 kb on + strand, within RR42_RS16595at 3597.065 kb on + strand, within RR42_RS16595at 3597.078 kb on + strand, within RR42_RS16595at 3597.108 kb on + strand, within RR42_RS16595at 3597.126 kb on + strand, within RR42_RS16595at 3597.163 kb on + strand, within RR42_RS16595at 3597.164 kb on - strand, within RR42_RS16595at 3597.164 kb on - strand, within RR42_RS16595at 3597.172 kb on + strand, within RR42_RS16595at 3597.204 kb on + strand, within RR42_RS16595at 3597.207 kb on + strand, within RR42_RS16595at 3597.207 kb on + strand, within RR42_RS16595at 3597.207 kb on + strand, within RR42_RS16595at 3597.207 kb on + strand, within RR42_RS16595at 3597.208 kb on - strand, within RR42_RS16595at 3597.208 kb on - strand, within RR42_RS16595at 3597.208 kb on - strand, within RR42_RS16595at 3597.329 kb on + strand, within RR42_RS16595at 3597.329 kb on + strand, within RR42_RS16595at 3597.330 kb on - strand, within RR42_RS16595at 3597.364 kb on + strand, within RR42_RS16595at 3597.617 kb on + strandat 3597.618 kb on - strandat 3597.618 kb on - strandat 3597.667 kb on + strand, within RR42_RS16600at 3597.735 kb on + strand, within RR42_RS16600at 3597.735 kb on + strand, within RR42_RS16600at 3597.736 kb on - strand, within RR42_RS16600at 3597.852 kb on - strand, within RR42_RS16600at 3597.852 kb on - strand, within RR42_RS16600at 3597.876 kb on + strand, within RR42_RS16600at 3597.876 kb on + strand, within RR42_RS16600at 3597.961 kb on - strand, within RR42_RS16600at 3597.961 kb on - strand, within RR42_RS16600at 3597.980 kb on + strand, within RR42_RS16600at 3597.981 kb on - strand, within RR42_RS16600at 3598.073 kb on - strand, within RR42_RS16600at 3598.073 kb on - strand, within RR42_RS16600at 3598.094 kb on + strand, within RR42_RS16600at 3598.094 kb on + strand, within RR42_RS16600at 3598.094 kb on + strand, within RR42_RS16600at 3598.094 kb on + strand, within RR42_RS16600at 3598.137 kb on + strand, within RR42_RS16600at 3598.138 kb on - strand, within RR42_RS16600at 3598.138 kb on - strand, within RR42_RS16600at 3598.138 kb on - strand, within RR42_RS16600at 3598.273 kb on + strand, within RR42_RS16600at 3598.273 kb on + strand, within RR42_RS16600at 3598.274 kb on - strand, within RR42_RS16600at 3598.274 kb on - strand, within RR42_RS16600at 3598.291 kb on + strand, within RR42_RS16600at 3598.292 kb on - strand, within RR42_RS16600at 3598.292 kb on - strand, within RR42_RS16600at 3598.300 kb on + strand, within RR42_RS16600at 3598.301 kb on - strand, within RR42_RS16600at 3598.301 kb on - strand, within RR42_RS16600at 3598.329 kb on + strand, within RR42_RS16600at 3598.329 kb on + strand, within RR42_RS16600at 3598.329 kb on + strand, within RR42_RS16600at 3598.329 kb on + strand, within RR42_RS16600at 3598.329 kb on + strand, within RR42_RS16600at 3598.331 kb on + strand, within RR42_RS16600at 3598.332 kb on - strand, within RR42_RS16600at 3598.454 kb on + strand, within RR42_RS16600at 3598.455 kb on - strand, within RR42_RS16600

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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3,595,295 + RR42_RS16585 0.77 -0.7
3,595,313 + RR42_RS16585 0.80 +0.5
3,595,313 + RR42_RS16585 0.80 +0.3
3,595,314 - RR42_RS16585 0.80 -0.0
3,595,381 + -1.4
3,595,382 - -2.1
3,595,492 + -0.0
3,595,493 - +1.6
3,595,515 + -0.7
3,595,515 + -0.5
3,595,515 + -0.7
3,595,648 + RR42_RS16590 0.20 -0.8
3,595,723 + RR42_RS16590 0.31 -1.3
3,595,740 + RR42_RS16590 0.34 +1.5
3,595,986 + RR42_RS16590 0.70 +0.9
3,595,987 - RR42_RS16590 0.70 +0.1
3,596,241 - -0.4
3,596,275 + -0.2
3,596,277 + +0.0
3,596,277 + +0.1
3,596,279 + +0.6
3,596,280 - +0.9
3,596,407 - RR42_RS16595 0.11 +0.3
3,596,431 + RR42_RS16595 0.13 -0.4
3,596,431 + RR42_RS16595 0.13 +1.7
3,596,431 + RR42_RS16595 0.13 -0.1
3,596,432 - RR42_RS16595 0.13 +0.8
3,596,467 + RR42_RS16595 0.16 +0.1
3,596,467 + RR42_RS16595 0.16 -0.2
3,596,507 + RR42_RS16595 0.20 +0.1
3,596,613 + RR42_RS16595 0.28 -0.6
3,596,613 + RR42_RS16595 0.28 +0.5
3,596,616 - RR42_RS16595 0.28 -1.7
3,596,624 + RR42_RS16595 0.29 +0.6
3,596,705 + RR42_RS16595 0.36 -0.7
3,596,706 - RR42_RS16595 0.36 +0.2
3,596,776 - RR42_RS16595 0.41 -0.3
3,596,776 - RR42_RS16595 0.41 +1.3
3,596,776 - RR42_RS16595 0.41 +2.2
3,596,776 - RR42_RS16595 0.41 -1.3
3,596,917 + RR42_RS16595 0.53 -0.1
3,596,932 + RR42_RS16595 0.54 +0.0
3,596,993 - RR42_RS16595 0.59 +0.3
3,597,046 + RR42_RS16595 0.63 +1.5
3,597,065 + RR42_RS16595 0.65 +1.1
3,597,078 + RR42_RS16595 0.66 +2.1
3,597,108 + RR42_RS16595 0.68 -0.3
3,597,126 + RR42_RS16595 0.69 +0.1
3,597,163 + RR42_RS16595 0.72 +0.1
3,597,164 - RR42_RS16595 0.73 -0.5
3,597,164 - RR42_RS16595 0.73 -1.0
3,597,172 + RR42_RS16595 0.73 +0.5
3,597,204 + RR42_RS16595 0.76 -0.5
3,597,207 + RR42_RS16595 0.76 -0.6
3,597,207 + RR42_RS16595 0.76 +0.4
3,597,207 + RR42_RS16595 0.76 -0.2
3,597,207 + RR42_RS16595 0.76 -0.1
3,597,208 - RR42_RS16595 0.76 -0.7
3,597,208 - RR42_RS16595 0.76 -1.0
3,597,208 - RR42_RS16595 0.76 -1.2
3,597,329 + RR42_RS16595 0.86 +0.1
3,597,329 + RR42_RS16595 0.86 +0.4
3,597,330 - RR42_RS16595 0.86 -0.0
3,597,364 + RR42_RS16595 0.89 +0.1
3,597,617 + -0.4
3,597,618 - -0.4
3,597,618 - -0.5
3,597,667 + RR42_RS16600 0.10 -0.5
3,597,735 + RR42_RS16600 0.15 +1.0
3,597,735 + RR42_RS16600 0.15 -0.9
3,597,736 - RR42_RS16600 0.15 +1.1
3,597,852 - RR42_RS16600 0.22 -0.1
3,597,852 - RR42_RS16600 0.22 +1.1
3,597,876 + RR42_RS16600 0.23 -0.5
3,597,876 + RR42_RS16600 0.23 -0.3
3,597,961 - RR42_RS16600 0.29 -3.4
3,597,961 - RR42_RS16600 0.29 -0.1
3,597,980 + RR42_RS16600 0.30 -0.5
3,597,981 - RR42_RS16600 0.30 -0.2
3,598,073 - RR42_RS16600 0.36 +0.4
3,598,073 - RR42_RS16600 0.36 -0.9
3,598,094 + RR42_RS16600 0.37 +0.1
3,598,094 + RR42_RS16600 0.37 +0.4
3,598,094 + RR42_RS16600 0.37 -0.6
3,598,094 + RR42_RS16600 0.37 +0.2
3,598,137 + RR42_RS16600 0.40 +1.0
3,598,138 - RR42_RS16600 0.40 +0.1
3,598,138 - RR42_RS16600 0.40 +0.4
3,598,138 - RR42_RS16600 0.40 +0.9
3,598,273 + RR42_RS16600 0.48 -0.5
3,598,273 + RR42_RS16600 0.48 +0.4
3,598,274 - RR42_RS16600 0.48 -0.4
3,598,274 - RR42_RS16600 0.48 -0.3
3,598,291 + RR42_RS16600 0.49 +0.8
3,598,292 - RR42_RS16600 0.49 +0.8
3,598,292 - RR42_RS16600 0.49 +0.0
3,598,300 + RR42_RS16600 0.50 +0.3
3,598,301 - RR42_RS16600 0.50 +2.9
3,598,301 - RR42_RS16600 0.50 +0.7
3,598,329 + RR42_RS16600 0.52 +1.1
3,598,329 + RR42_RS16600 0.52 -2.0
3,598,329 + RR42_RS16600 0.52 +0.2
3,598,329 + RR42_RS16600 0.52 +0.4
3,598,329 + RR42_RS16600 0.52 +0.2
3,598,331 + RR42_RS16600 0.52 -1.0
3,598,332 - RR42_RS16600 0.52 -0.3
3,598,454 + RR42_RS16600 0.59 -0.3
3,598,455 - RR42_RS16600 0.60 +0.4

Or see this region's nucleotide sequence