Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS16410 and RR42_RS16415 are separated by 284 nucleotides RR42_RS16415 and RR42_RS16420 are separated by 117 nucleotides
RR42_RS16410: RR42_RS16410 - LysR family transcriptional regulator, at 3,552,690 to 3,553,595
_RS16410
RR42_RS16415: RR42_RS16415 - TetR family transcriptional regulator, at 3,553,880 to 3,554,512
_RS16415
RR42_RS16420: RR42_RS16420 - pyridine nucleotide-disulfide oxidoreductase, at 3,554,630 to 3,555,523
_RS16420
Position (kb)
3553
3554
3555 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3552.888 kb on + strand, within RR42_RS16410 at 3552.888 kb on + strand, within RR42_RS16410 at 3552.888 kb on + strand, within RR42_RS16410 at 3552.933 kb on + strand, within RR42_RS16410 at 3552.979 kb on + strand, within RR42_RS16410 at 3552.979 kb on + strand, within RR42_RS16410 at 3553.176 kb on + strand, within RR42_RS16410 at 3553.176 kb on + strand, within RR42_RS16410 at 3553.243 kb on + strand, within RR42_RS16410 at 3553.243 kb on + strand, within RR42_RS16410 at 3553.244 kb on - strand, within RR42_RS16410 at 3553.287 kb on - strand, within RR42_RS16410 at 3553.388 kb on - strand, within RR42_RS16410 at 3553.403 kb on + strand, within RR42_RS16410 at 3553.550 kb on + strand at 3553.609 kb on + strand at 3553.704 kb on - strand at 3553.750 kb on - strand at 3553.881 kb on + strand at 3553.881 kb on + strand at 3553.881 kb on + strand at 3553.882 kb on - strand at 3553.882 kb on - strand at 3554.107 kb on - strand, within RR42_RS16415 at 3554.125 kb on - strand, within RR42_RS16415 at 3554.353 kb on - strand, within RR42_RS16415 at 3554.353 kb on - strand, within RR42_RS16415 at 3554.361 kb on - strand, within RR42_RS16415 at 3554.361 kb on - strand, within RR42_RS16415 at 3554.361 kb on - strand, within RR42_RS16415 at 3554.369 kb on + strand, within RR42_RS16415 at 3554.450 kb on + strand at 3554.802 kb on + strand, within RR42_RS16420 at 3554.802 kb on + strand, within RR42_RS16420 at 3554.802 kb on + strand, within RR42_RS16420 at 3554.803 kb on - strand, within RR42_RS16420 at 3554.923 kb on - strand, within RR42_RS16420 at 3554.948 kb on + strand, within RR42_RS16420 at 3554.948 kb on + strand, within RR42_RS16420 at 3554.948 kb on + strand, within RR42_RS16420 at 3554.949 kb on - strand, within RR42_RS16420 at 3555.024 kb on - strand, within RR42_RS16420 at 3555.192 kb on + strand, within RR42_RS16420 at 3555.192 kb on + strand, within RR42_RS16420 at 3555.192 kb on + strand, within RR42_RS16420 at 3555.192 kb on + strand, within RR42_RS16420 at 3555.192 kb on + strand, within RR42_RS16420 at 3555.192 kb on + strand, within RR42_RS16420 at 3555.193 kb on - strand, within RR42_RS16420 at 3555.193 kb on - strand, within RR42_RS16420 at 3555.193 kb on - strand, within RR42_RS16420 at 3555.193 kb on - strand, within RR42_RS16420 at 3555.193 kb on - strand, within RR42_RS16420 at 3555.193 kb on - strand, within RR42_RS16420 at 3555.241 kb on + strand, within RR42_RS16420 at 3555.242 kb on - strand, within RR42_RS16420 at 3555.358 kb on + strand, within RR42_RS16420 at 3555.419 kb on + strand, within RR42_RS16420 at 3555.419 kb on + strand, within RR42_RS16420 at 3555.420 kb on - strand, within RR42_RS16420 at 3555.420 kb on - strand, within RR42_RS16420 at 3555.494 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 3,552,888 + RR42_RS16410 0.22 -0.6 3,552,888 + RR42_RS16410 0.22 -0.6 3,552,888 + RR42_RS16410 0.22 -0.6 3,552,933 + RR42_RS16410 0.27 +0.1 3,552,979 + RR42_RS16410 0.32 +0.2 3,552,979 + RR42_RS16410 0.32 -0.3 3,553,176 + RR42_RS16410 0.54 -1.1 3,553,176 + RR42_RS16410 0.54 +0.7 3,553,243 + RR42_RS16410 0.61 -0.0 3,553,243 + RR42_RS16410 0.61 -0.0 3,553,244 - RR42_RS16410 0.61 -0.6 3,553,287 - RR42_RS16410 0.66 -0.2 3,553,388 - RR42_RS16410 0.77 -0.8 3,553,403 + RR42_RS16410 0.79 -1.2 3,553,550 + +1.2 3,553,609 + +1.1 3,553,704 - +1.0 3,553,750 - -0.6 3,553,881 + -0.5 3,553,881 + +0.3 3,553,881 + +0.4 3,553,882 - -0.5 3,553,882 - -0.6 3,554,107 - RR42_RS16415 0.36 -1.7 3,554,125 - RR42_RS16415 0.39 -0.7 3,554,353 - RR42_RS16415 0.75 -1.2 3,554,353 - RR42_RS16415 0.75 -0.7 3,554,361 - RR42_RS16415 0.76 -1.4 3,554,361 - RR42_RS16415 0.76 -0.7 3,554,361 - RR42_RS16415 0.76 -0.1 3,554,369 + RR42_RS16415 0.77 -0.3 3,554,450 + +0.6 3,554,802 + RR42_RS16420 0.19 +0.9 3,554,802 + RR42_RS16420 0.19 +0.6 3,554,802 + RR42_RS16420 0.19 +0.4 3,554,803 - RR42_RS16420 0.19 -0.1 3,554,923 - RR42_RS16420 0.33 +0.5 3,554,948 + RR42_RS16420 0.36 +0.2 3,554,948 + RR42_RS16420 0.36 +0.5 3,554,948 + RR42_RS16420 0.36 -1.4 3,554,949 - RR42_RS16420 0.36 -2.3 3,555,024 - RR42_RS16420 0.44 -0.8 3,555,192 + RR42_RS16420 0.63 +0.9 3,555,192 + RR42_RS16420 0.63 -0.2 3,555,192 + RR42_RS16420 0.63 +0.8 3,555,192 + RR42_RS16420 0.63 -0.7 3,555,192 + RR42_RS16420 0.63 +2.8 3,555,192 + RR42_RS16420 0.63 -0.5 3,555,193 - RR42_RS16420 0.63 +1.8 3,555,193 - RR42_RS16420 0.63 +0.3 3,555,193 - RR42_RS16420 0.63 +0.1 3,555,193 - RR42_RS16420 0.63 +0.3 3,555,193 - RR42_RS16420 0.63 +0.4 3,555,193 - RR42_RS16420 0.63 +1.0 3,555,241 + RR42_RS16420 0.68 -0.5 3,555,242 - RR42_RS16420 0.68 +1.3 3,555,358 + RR42_RS16420 0.81 -1.6 3,555,419 + RR42_RS16420 0.88 +2.0 3,555,419 + RR42_RS16420 0.88 -0.3 3,555,420 - RR42_RS16420 0.88 -1.0 3,555,420 - RR42_RS16420 0.88 +0.1 3,555,494 - +0.4
Or see this region's nucleotide sequence