Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16415

Experiment: L-Valine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS16410 and RR42_RS16415 are separated by 284 nucleotidesRR42_RS16415 and RR42_RS16420 are separated by 117 nucleotides RR42_RS16410: RR42_RS16410 - LysR family transcriptional regulator, at 3,552,690 to 3,553,595 _RS16410 RR42_RS16415: RR42_RS16415 - TetR family transcriptional regulator, at 3,553,880 to 3,554,512 _RS16415 RR42_RS16420: RR42_RS16420 - pyridine nucleotide-disulfide oxidoreductase, at 3,554,630 to 3,555,523 _RS16420 Position (kb) 3553 3554 3555Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3552.888 kb on + strand, within RR42_RS16410at 3552.888 kb on + strand, within RR42_RS16410at 3552.888 kb on + strand, within RR42_RS16410at 3552.933 kb on + strand, within RR42_RS16410at 3552.979 kb on + strand, within RR42_RS16410at 3552.979 kb on + strand, within RR42_RS16410at 3553.176 kb on + strand, within RR42_RS16410at 3553.176 kb on + strand, within RR42_RS16410at 3553.243 kb on + strand, within RR42_RS16410at 3553.243 kb on + strand, within RR42_RS16410at 3553.244 kb on - strand, within RR42_RS16410at 3553.287 kb on - strand, within RR42_RS16410at 3553.388 kb on - strand, within RR42_RS16410at 3553.403 kb on + strand, within RR42_RS16410at 3553.550 kb on + strandat 3553.609 kb on + strandat 3553.704 kb on - strandat 3553.750 kb on - strandat 3553.881 kb on + strandat 3553.881 kb on + strandat 3553.881 kb on + strandat 3553.882 kb on - strandat 3553.882 kb on - strandat 3554.107 kb on - strand, within RR42_RS16415at 3554.125 kb on - strand, within RR42_RS16415at 3554.353 kb on - strand, within RR42_RS16415at 3554.353 kb on - strand, within RR42_RS16415at 3554.361 kb on - strand, within RR42_RS16415at 3554.361 kb on - strand, within RR42_RS16415at 3554.361 kb on - strand, within RR42_RS16415at 3554.369 kb on + strand, within RR42_RS16415at 3554.450 kb on + strandat 3554.802 kb on + strand, within RR42_RS16420at 3554.802 kb on + strand, within RR42_RS16420at 3554.802 kb on + strand, within RR42_RS16420at 3554.803 kb on - strand, within RR42_RS16420at 3554.923 kb on - strand, within RR42_RS16420at 3554.948 kb on + strand, within RR42_RS16420at 3554.948 kb on + strand, within RR42_RS16420at 3554.948 kb on + strand, within RR42_RS16420at 3554.949 kb on - strand, within RR42_RS16420at 3555.024 kb on - strand, within RR42_RS16420at 3555.192 kb on + strand, within RR42_RS16420at 3555.192 kb on + strand, within RR42_RS16420at 3555.192 kb on + strand, within RR42_RS16420at 3555.192 kb on + strand, within RR42_RS16420at 3555.192 kb on + strand, within RR42_RS16420at 3555.192 kb on + strand, within RR42_RS16420at 3555.193 kb on - strand, within RR42_RS16420at 3555.193 kb on - strand, within RR42_RS16420at 3555.193 kb on - strand, within RR42_RS16420at 3555.193 kb on - strand, within RR42_RS16420at 3555.193 kb on - strand, within RR42_RS16420at 3555.193 kb on - strand, within RR42_RS16420at 3555.241 kb on + strand, within RR42_RS16420at 3555.242 kb on - strand, within RR42_RS16420at 3555.358 kb on + strand, within RR42_RS16420at 3555.419 kb on + strand, within RR42_RS16420at 3555.419 kb on + strand, within RR42_RS16420at 3555.420 kb on - strand, within RR42_RS16420at 3555.420 kb on - strand, within RR42_RS16420at 3555.494 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
remove
3,552,888 + RR42_RS16410 0.22 -0.6
3,552,888 + RR42_RS16410 0.22 -0.6
3,552,888 + RR42_RS16410 0.22 -0.6
3,552,933 + RR42_RS16410 0.27 +0.1
3,552,979 + RR42_RS16410 0.32 +0.2
3,552,979 + RR42_RS16410 0.32 -0.3
3,553,176 + RR42_RS16410 0.54 -1.1
3,553,176 + RR42_RS16410 0.54 +0.7
3,553,243 + RR42_RS16410 0.61 -0.0
3,553,243 + RR42_RS16410 0.61 -0.0
3,553,244 - RR42_RS16410 0.61 -0.6
3,553,287 - RR42_RS16410 0.66 -0.2
3,553,388 - RR42_RS16410 0.77 -0.8
3,553,403 + RR42_RS16410 0.79 -1.2
3,553,550 + +1.2
3,553,609 + +1.1
3,553,704 - +1.0
3,553,750 - -0.6
3,553,881 + -0.5
3,553,881 + +0.3
3,553,881 + +0.4
3,553,882 - -0.5
3,553,882 - -0.6
3,554,107 - RR42_RS16415 0.36 -1.7
3,554,125 - RR42_RS16415 0.39 -0.7
3,554,353 - RR42_RS16415 0.75 -1.2
3,554,353 - RR42_RS16415 0.75 -0.7
3,554,361 - RR42_RS16415 0.76 -1.4
3,554,361 - RR42_RS16415 0.76 -0.7
3,554,361 - RR42_RS16415 0.76 -0.1
3,554,369 + RR42_RS16415 0.77 -0.3
3,554,450 + +0.6
3,554,802 + RR42_RS16420 0.19 +0.9
3,554,802 + RR42_RS16420 0.19 +0.6
3,554,802 + RR42_RS16420 0.19 +0.4
3,554,803 - RR42_RS16420 0.19 -0.1
3,554,923 - RR42_RS16420 0.33 +0.5
3,554,948 + RR42_RS16420 0.36 +0.2
3,554,948 + RR42_RS16420 0.36 +0.5
3,554,948 + RR42_RS16420 0.36 -1.4
3,554,949 - RR42_RS16420 0.36 -2.3
3,555,024 - RR42_RS16420 0.44 -0.8
3,555,192 + RR42_RS16420 0.63 +0.9
3,555,192 + RR42_RS16420 0.63 -0.2
3,555,192 + RR42_RS16420 0.63 +0.8
3,555,192 + RR42_RS16420 0.63 -0.7
3,555,192 + RR42_RS16420 0.63 +2.8
3,555,192 + RR42_RS16420 0.63 -0.5
3,555,193 - RR42_RS16420 0.63 +1.8
3,555,193 - RR42_RS16420 0.63 +0.3
3,555,193 - RR42_RS16420 0.63 +0.1
3,555,193 - RR42_RS16420 0.63 +0.3
3,555,193 - RR42_RS16420 0.63 +0.4
3,555,193 - RR42_RS16420 0.63 +1.0
3,555,241 + RR42_RS16420 0.68 -0.5
3,555,242 - RR42_RS16420 0.68 +1.3
3,555,358 + RR42_RS16420 0.81 -1.6
3,555,419 + RR42_RS16420 0.88 +2.0
3,555,419 + RR42_RS16420 0.88 -0.3
3,555,420 - RR42_RS16420 0.88 -1.0
3,555,420 - RR42_RS16420 0.88 +0.1
3,555,494 - +0.4

Or see this region's nucleotide sequence