Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16210

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16205 and RR42_RS16210 are separated by 164 nucleotidesRR42_RS16210 and RR42_RS16215 are separated by 97 nucleotidesRR42_RS16215 and RR42_RS16220 overlap by 4 nucleotides RR42_RS16205: RR42_RS16205 - LysR family transcriptional regulator, at 3,507,904 to 3,508,926 _RS16205 RR42_RS16210: RR42_RS16210 - dihydroxy-acid dehydratase, at 3,509,091 to 3,510,764 _RS16210 RR42_RS16215: RR42_RS16215 - hypothetical protein, at 3,510,862 to 3,511,455 _RS16215 RR42_RS16220: RR42_RS16220 - DNA polymerase III subunit chi, at 3,511,452 to 3,511,922 _RS16220 Position (kb) 3509 3510 3511Strain fitness (log2 ratio) -2 -1 0 1at 3508.128 kb on - strand, within RR42_RS16205at 3508.128 kb on - strand, within RR42_RS16205at 3508.128 kb on - strand, within RR42_RS16205at 3508.265 kb on + strand, within RR42_RS16205at 3508.266 kb on - strand, within RR42_RS16205at 3508.275 kb on + strand, within RR42_RS16205at 3508.275 kb on + strand, within RR42_RS16205at 3508.286 kb on + strand, within RR42_RS16205at 3508.287 kb on - strand, within RR42_RS16205at 3508.287 kb on - strand, within RR42_RS16205at 3508.287 kb on - strand, within RR42_RS16205at 3508.448 kb on + strand, within RR42_RS16205at 3508.449 kb on - strand, within RR42_RS16205at 3508.619 kb on + strand, within RR42_RS16205at 3508.620 kb on - strand, within RR42_RS16205at 3508.620 kb on - strand, within RR42_RS16205at 3508.879 kb on + strandat 3508.879 kb on + strandat 3508.879 kb on + strandat 3508.879 kb on + strandat 3508.879 kb on + strandat 3508.904 kb on + strandat 3511.137 kb on - strand, within RR42_RS16215

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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3,508,128 - RR42_RS16205 0.22 -0.7
3,508,128 - RR42_RS16205 0.22 +0.2
3,508,128 - RR42_RS16205 0.22 +0.1
3,508,265 + RR42_RS16205 0.35 +1.4
3,508,266 - RR42_RS16205 0.35 -1.9
3,508,275 + RR42_RS16205 0.36 +0.5
3,508,275 + RR42_RS16205 0.36 +1.3
3,508,286 + RR42_RS16205 0.37 +0.2
3,508,287 - RR42_RS16205 0.37 -0.4
3,508,287 - RR42_RS16205 0.37 +0.3
3,508,287 - RR42_RS16205 0.37 -0.5
3,508,448 + RR42_RS16205 0.53 -0.2
3,508,449 - RR42_RS16205 0.53 +0.4
3,508,619 + RR42_RS16205 0.70 -0.3
3,508,620 - RR42_RS16205 0.70 -0.9
3,508,620 - RR42_RS16205 0.70 +1.3
3,508,879 + -2.3
3,508,879 + +0.9
3,508,879 + +0.3
3,508,879 + -0.1
3,508,879 + +0.3
3,508,904 + +0.5
3,511,137 - RR42_RS16215 0.46 -1.1

Or see this region's nucleotide sequence