Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15900

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS15895 and RR42_RS15900 are separated by 9 nucleotidesRR42_RS15900 and RR42_RS15905 are separated by 79 nucleotides RR42_RS15895: RR42_RS15895 - uroporphyrinogen III methyltransferase, at 3,435,570 to 3,437,732 _RS15895 RR42_RS15900: RR42_RS15900 - porphobilinogen deaminase, at 3,437,742 to 3,438,743 _RS15900 RR42_RS15905: RR42_RS15905 - phosphoenolpyruvate carboxylase, at 3,438,823 to 3,441,846 _RS15905 Position (kb) 3437 3438 3439Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3438.755 kb on - strandat 3438.755 kb on - strandat 3438.798 kb on + strandat 3438.798 kb on + strandat 3438.798 kb on + strandat 3438.798 kb on + strandat 3438.798 kb on + strandat 3438.799 kb on - strandat 3438.799 kb on - strandat 3438.799 kb on - strandat 3438.802 kb on + strandat 3438.802 kb on + strandat 3438.802 kb on + strandat 3438.803 kb on - strandat 3439.258 kb on + strand, within RR42_RS15905at 3439.259 kb on - strand, within RR42_RS15905at 3439.660 kb on + strand, within RR42_RS15905at 3439.661 kb on - strand, within RR42_RS15905at 3439.663 kb on + strand, within RR42_RS15905at 3439.663 kb on + strand, within RR42_RS15905

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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3,438,755 - -1.8
3,438,755 - -3.0
3,438,798 + +0.5
3,438,798 + +0.7
3,438,798 + +0.3
3,438,798 + +0.5
3,438,798 + +0.1
3,438,799 - -3.6
3,438,799 - -3.1
3,438,799 - -1.1
3,438,802 + -0.3
3,438,802 + +0.5
3,438,802 + +0.2
3,438,803 - -4.9
3,439,258 + RR42_RS15905 0.14 -1.8
3,439,259 - RR42_RS15905 0.14 -2.8
3,439,660 + RR42_RS15905 0.28 -2.3
3,439,661 - RR42_RS15905 0.28 -3.3
3,439,663 + RR42_RS15905 0.28 -3.6
3,439,663 + RR42_RS15905 0.28 -2.3

Or see this region's nucleotide sequence