Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS14560 and RR42_RS14565 are separated by 84 nucleotides RR42_RS14565 and RR42_RS14570 are separated by 86 nucleotides RR42_RS14570 and RR42_RS14575 are separated by 17 nucleotides RR42_RS14575 and RR42_RS14580 are separated by 16 nucleotides
RR42_RS14560: RR42_RS14560 - GntR family transcriptional regulator, at 3,134,003 to 3,135,538
_RS14560
RR42_RS14565: RR42_RS14565 - glyoxalase, at 3,135,623 to 3,136,315
_RS14565
RR42_RS14570: RR42_RS14570 - Ala-tRNA(Pro) hydrolase, at 3,136,402 to 3,137,118
_RS14570
RR42_RS14575: RR42_RS14575 - threonine transporter, at 3,137,136 to 3,137,774
_RS14575
RR42_RS14580: RR42_RS14580 - multidrug DMT transporter permease, at 3,137,791 to 3,138,795
_RS14580
Position (kb) 3136
3137
3138 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3135.499 kb on + strand at 3135.557 kb on + strand at 3135.575 kb on + strand at 3135.608 kb on + strand at 3135.608 kb on + strand at 3135.779 kb on + strand, within RR42_RS14565 at 3135.779 kb on + strand, within RR42_RS14565 at 3135.780 kb on - strand, within RR42_RS14565 at 3136.119 kb on + strand, within RR42_RS14565 at 3136.120 kb on - strand, within RR42_RS14565 at 3136.120 kb on - strand, within RR42_RS14565 at 3136.120 kb on - strand, within RR42_RS14565 at 3136.342 kb on + strand at 3136.342 kb on + strand at 3136.363 kb on + strand at 3136.438 kb on + strand at 3136.438 kb on + strand at 3136.439 kb on - strand at 3136.510 kb on + strand, within RR42_RS14570 at 3136.511 kb on - strand, within RR42_RS14570 at 3136.511 kb on - strand, within RR42_RS14570 at 3136.594 kb on + strand, within RR42_RS14570 at 3136.716 kb on + strand, within RR42_RS14570 at 3136.717 kb on - strand, within RR42_RS14570 at 3136.717 kb on - strand, within RR42_RS14570 at 3136.929 kb on - strand, within RR42_RS14570 at 3136.929 kb on - strand, within RR42_RS14570 at 3137.134 kb on - strand at 3137.134 kb on - strand at 3137.296 kb on + strand, within RR42_RS14575 at 3137.326 kb on + strand, within RR42_RS14575 at 3137.398 kb on + strand, within RR42_RS14575 at 3137.398 kb on + strand, within RR42_RS14575 at 3137.399 kb on - strand, within RR42_RS14575 at 3137.403 kb on + strand, within RR42_RS14575 at 3137.403 kb on + strand, within RR42_RS14575 at 3137.404 kb on - strand, within RR42_RS14575 at 3137.404 kb on - strand, within RR42_RS14575 at 3137.404 kb on - strand, within RR42_RS14575 at 3137.503 kb on - strand, within RR42_RS14575 at 3137.550 kb on + strand, within RR42_RS14575 at 3137.551 kb on - strand, within RR42_RS14575 at 3137.551 kb on - strand, within RR42_RS14575 at 3137.551 kb on - strand, within RR42_RS14575 at 3137.551 kb on - strand, within RR42_RS14575 at 3137.551 kb on - strand, within RR42_RS14575 at 3137.553 kb on - strand, within RR42_RS14575 at 3137.773 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 3,135,499 + -1.7 3,135,557 + -1.0 3,135,575 + -2.4 3,135,608 + -0.3 3,135,608 + -1.6 3,135,779 + RR42_RS14565 0.23 -0.2 3,135,779 + RR42_RS14565 0.23 -0.6 3,135,780 - RR42_RS14565 0.23 +0.7 3,136,119 + RR42_RS14565 0.72 -0.1 3,136,120 - RR42_RS14565 0.72 +0.1 3,136,120 - RR42_RS14565 0.72 +0.4 3,136,120 - RR42_RS14565 0.72 +0.1 3,136,342 + -0.3 3,136,342 + -0.1 3,136,363 + -2.0 3,136,438 + -0.4 3,136,438 + +0.1 3,136,439 - -0.8 3,136,510 + RR42_RS14570 0.15 +0.6 3,136,511 - RR42_RS14570 0.15 +0.4 3,136,511 - RR42_RS14570 0.15 +0.1 3,136,594 + RR42_RS14570 0.27 +0.9 3,136,716 + RR42_RS14570 0.44 +0.1 3,136,717 - RR42_RS14570 0.44 +0.8 3,136,717 - RR42_RS14570 0.44 -0.0 3,136,929 - RR42_RS14570 0.74 +0.2 3,136,929 - RR42_RS14570 0.74 +0.5 3,137,134 - -0.4 3,137,134 - -0.8 3,137,296 + RR42_RS14575 0.25 -1.4 3,137,326 + RR42_RS14575 0.30 +0.2 3,137,398 + RR42_RS14575 0.41 +2.2 3,137,398 + RR42_RS14575 0.41 -0.2 3,137,399 - RR42_RS14575 0.41 +0.0 3,137,403 + RR42_RS14575 0.42 +0.8 3,137,403 + RR42_RS14575 0.42 +0.2 3,137,404 - RR42_RS14575 0.42 -1.1 3,137,404 - RR42_RS14575 0.42 +0.0 3,137,404 - RR42_RS14575 0.42 +0.5 3,137,503 - RR42_RS14575 0.57 +0.1 3,137,550 + RR42_RS14575 0.65 -0.1 3,137,551 - RR42_RS14575 0.65 +0.3 3,137,551 - RR42_RS14575 0.65 +0.9 3,137,551 - RR42_RS14575 0.65 -0.8 3,137,551 - RR42_RS14575 0.65 +0.5 3,137,551 - RR42_RS14575 0.65 -0.1 3,137,553 - RR42_RS14575 0.65 -0.4 3,137,773 - -0.1
Or see this region's nucleotide sequence