Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14455

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14445 and RR42_RS14450 are separated by 3 nucleotidesRR42_RS14450 and RR42_RS14455 are separated by 13 nucleotidesRR42_RS14455 and RR42_RS14460 are separated by 259 nucleotides RR42_RS14445: RR42_RS14445 - fumarate reductase, at 3,106,321 to 3,108,099 _RS14445 RR42_RS14450: RR42_RS14450 - succinate dehydrogenase, at 3,108,103 to 3,108,468 _RS14450 RR42_RS14455: RR42_RS14455 - succinate dehydrogenase, at 3,108,482 to 3,108,889 _RS14455 RR42_RS14460: RR42_RS14460 - GntR family transcriptional regulator, at 3,109,149 to 3,109,970 _RS14460 Position (kb) 3108 3109Strain fitness (log2 ratio) -1 0 1at 3109.007 kb on - strandat 3109.007 kb on - strandat 3109.018 kb on - strandat 3109.085 kb on - strandat 3109.085 kb on - strandat 3109.085 kb on - strandat 3109.122 kb on - strandat 3109.122 kb on - strandat 3109.122 kb on - strandat 3109.148 kb on - strandat 3109.169 kb on - strandat 3109.186 kb on - strandat 3109.190 kb on - strandat 3109.190 kb on - strandat 3109.373 kb on - strand, within RR42_RS14460

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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3,109,007 - -0.9
3,109,007 - +1.1
3,109,018 - +1.0
3,109,085 - +0.7
3,109,085 - -1.0
3,109,085 - +0.5
3,109,122 - -0.4
3,109,122 - +0.6
3,109,122 - +0.3
3,109,148 - -0.0
3,109,169 - -1.4
3,109,186 - -0.4
3,109,190 - +1.2
3,109,190 - -0.9
3,109,373 - RR42_RS14460 0.27 -0.1

Or see this region's nucleotide sequence