Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14445

Experiment: L-Valine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS14435 and RR42_RS14440 are separated by 81 nucleotidesRR42_RS14440 and RR42_RS14445 are separated by 31 nucleotidesRR42_RS14445 and RR42_RS14450 are separated by 3 nucleotidesRR42_RS14450 and RR42_RS14455 are separated by 13 nucleotides RR42_RS14435: RR42_RS14435 - hypothetical protein, at 3,105,219 to 3,105,506 _RS14435 RR42_RS14440: RR42_RS14440 - succinate dehydrogenase, at 3,105,588 to 3,106,289 _RS14440 RR42_RS14445: RR42_RS14445 - fumarate reductase, at 3,106,321 to 3,108,099 _RS14445 RR42_RS14450: RR42_RS14450 - succinate dehydrogenase, at 3,108,103 to 3,108,468 _RS14450 RR42_RS14455: RR42_RS14455 - succinate dehydrogenase, at 3,108,482 to 3,108,889 _RS14455 Position (kb) 3106 3107 3108 3109Strain fitness (log2 ratio) -1 0 1at 3105.511 kb on - strandat 3105.511 kb on - strandat 3105.515 kb on - strandat 3105.515 kb on - strandat 3105.537 kb on - strandat 3105.549 kb on - strandat 3105.571 kb on - strandat 3105.571 kb on - strandat 3109.007 kb on - strandat 3109.007 kb on - strandat 3109.018 kb on - strandat 3109.085 kb on - strandat 3109.085 kb on - strandat 3109.085 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
remove
3,105,511 - -1.4
3,105,511 - -0.4
3,105,515 - -1.4
3,105,515 - -1.0
3,105,537 - +0.9
3,105,549 - +0.0
3,105,571 - -0.3
3,105,571 - +0.5
3,109,007 - -0.9
3,109,007 - +1.1
3,109,018 - +1.0
3,109,085 - +0.7
3,109,085 - -1.0
3,109,085 - +0.5

Or see this region's nucleotide sequence