Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS14435 and RR42_RS14440 are separated by 81 nucleotides RR42_RS14440 and RR42_RS14445 are separated by 31 nucleotides RR42_RS14445 and RR42_RS14450 are separated by 3 nucleotides RR42_RS14450 and RR42_RS14455 are separated by 13 nucleotides
RR42_RS14435: RR42_RS14435 - hypothetical protein, at 3,105,219 to 3,105,506
_RS14435
RR42_RS14440: RR42_RS14440 - succinate dehydrogenase, at 3,105,588 to 3,106,289
_RS14440
RR42_RS14445: RR42_RS14445 - fumarate reductase, at 3,106,321 to 3,108,099
_RS14445
RR42_RS14450: RR42_RS14450 - succinate dehydrogenase, at 3,108,103 to 3,108,468
_RS14450
RR42_RS14455: RR42_RS14455 - succinate dehydrogenase, at 3,108,482 to 3,108,889
_RS14455
Position (kb)
3106
3107
3108
3109 Strain fitness (log2 ratio)
-1
0
1 at 3105.511 kb on - strand at 3105.511 kb on - strand at 3105.515 kb on - strand at 3105.515 kb on - strand at 3105.537 kb on - strand at 3105.549 kb on - strand at 3105.571 kb on - strand at 3105.571 kb on - strand at 3109.007 kb on - strand at 3109.007 kb on - strand at 3109.018 kb on - strand at 3109.085 kb on - strand at 3109.085 kb on - strand at 3109.085 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 3,105,511 - -1.4 3,105,511 - -0.4 3,105,515 - -1.4 3,105,515 - -1.0 3,105,537 - +0.9 3,105,549 - +0.0 3,105,571 - -0.3 3,105,571 - +0.5 3,109,007 - -0.9 3,109,007 - +1.1 3,109,018 - +1.0 3,109,085 - +0.7 3,109,085 - -1.0 3,109,085 - +0.5
Or see this region's nucleotide sequence