Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14050

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14040 and RR42_RS14045 are separated by 1 nucleotidesRR42_RS14045 and RR42_RS14050 are separated by 180 nucleotidesRR42_RS14050 and RR42_RS14055 are separated by 87 nucleotides RR42_RS14040: RR42_RS14040 - ribonuclease III, at 3,022,263 to 3,023,033 _RS14040 RR42_RS14045: RR42_RS14045 - membrane protein, at 3,023,035 to 3,023,391 _RS14045 RR42_RS14050: RR42_RS14050 - signal peptidase, at 3,023,572 to 3,024,471 _RS14050 RR42_RS14055: RR42_RS14055 - elongation factor 4, at 3,024,559 to 3,026,352 _RS14055 Position (kb) 3023 3024 3025Strain fitness (log2 ratio) -2 -1 0 1at 3023.055 kb on - strandat 3023.059 kb on - strandat 3023.082 kb on - strand, within RR42_RS14045at 3023.082 kb on - strand, within RR42_RS14045at 3023.084 kb on - strand, within RR42_RS14045at 3023.179 kb on - strand, within RR42_RS14045at 3023.574 kb on - strandat 3024.479 kb on - strandat 3024.479 kb on - strandat 3024.500 kb on - strandat 3024.783 kb on - strand, within RR42_RS14055at 3024.783 kb on - strand, within RR42_RS14055

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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3,023,055 - +0.9
3,023,059 - +1.0
3,023,082 - RR42_RS14045 0.13 -0.7
3,023,082 - RR42_RS14045 0.13 -0.3
3,023,084 - RR42_RS14045 0.14 +0.5
3,023,179 - RR42_RS14045 0.40 -1.1
3,023,574 - +0.0
3,024,479 - +1.6
3,024,479 - -0.3
3,024,500 - +0.7
3,024,783 - RR42_RS14055 0.12 -1.2
3,024,783 - RR42_RS14055 0.12 -1.8

Or see this region's nucleotide sequence