Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11005

Experiment: L-Valine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS11000 and RR42_RS11005 are separated by 316 nucleotidesRR42_RS11005 and RR42_RS11010 are separated by 80 nucleotidesRR42_RS11010 and RR42_RS11015 are separated by 141 nucleotides RR42_RS11000: RR42_RS11000 - alpha/beta hydrolase, at 2,349,045 to 2,350,010 _RS11000 RR42_RS11005: RR42_RS11005 - 4-hydroxybutyrate dehydrogenase, at 2,350,327 to 2,351,475 _RS11005 RR42_RS11010: RR42_RS11010 - macro domain-containing protein, at 2,351,556 to 2,352,077 _RS11010 RR42_RS11015: RR42_RS11015 - hypothetical protein, at 2,352,219 to 2,352,500 _RS11015 Position (kb) 2350 2351 2352Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2349.341 kb on - strand, within RR42_RS11000at 2349.341 kb on - strand, within RR42_RS11000at 2349.382 kb on + strand, within RR42_RS11000at 2349.439 kb on + strand, within RR42_RS11000at 2349.439 kb on + strand, within RR42_RS11000at 2349.439 kb on + strand, within RR42_RS11000at 2349.440 kb on - strand, within RR42_RS11000at 2349.440 kb on - strand, within RR42_RS11000at 2349.440 kb on - strand, within RR42_RS11000at 2349.440 kb on - strand, within RR42_RS11000at 2349.646 kb on + strand, within RR42_RS11000at 2349.749 kb on - strand, within RR42_RS11000at 2349.796 kb on + strand, within RR42_RS11000at 2349.797 kb on - strand, within RR42_RS11000at 2350.175 kb on + strandat 2350.176 kb on - strandat 2350.206 kb on - strandat 2350.324 kb on + strandat 2350.324 kb on + strandat 2350.324 kb on + strandat 2350.324 kb on + strandat 2350.324 kb on + strandat 2350.324 kb on + strandat 2350.325 kb on - strandat 2350.325 kb on - strandat 2350.325 kb on - strandat 2350.325 kb on - strandat 2350.325 kb on - strandat 2350.325 kb on - strandat 2350.325 kb on - strandat 2350.509 kb on - strand, within RR42_RS11005at 2350.672 kb on + strand, within RR42_RS11005at 2350.672 kb on + strand, within RR42_RS11005at 2350.673 kb on - strand, within RR42_RS11005at 2350.844 kb on + strand, within RR42_RS11005at 2350.844 kb on + strand, within RR42_RS11005at 2350.844 kb on + strand, within RR42_RS11005at 2350.844 kb on + strand, within RR42_RS11005at 2351.001 kb on + strand, within RR42_RS11005at 2351.002 kb on - strand, within RR42_RS11005at 2351.473 kb on + strandat 2351.473 kb on + strandat 2351.473 kb on + strandat 2351.473 kb on + strandat 2351.473 kb on + strandat 2351.474 kb on - strandat 2351.787 kb on + strand, within RR42_RS11010at 2351.787 kb on + strand, within RR42_RS11010at 2351.787 kb on + strand, within RR42_RS11010at 2351.788 kb on - strand, within RR42_RS11010at 2351.859 kb on + strand, within RR42_RS11010at 2351.918 kb on + strand, within RR42_RS11010at 2351.919 kb on - strand, within RR42_RS11010at 2351.934 kb on + strand, within RR42_RS11010at 2351.934 kb on + strand, within RR42_RS11010at 2351.934 kb on + strand, within RR42_RS11010at 2351.935 kb on - strand, within RR42_RS11010at 2351.935 kb on - strand, within RR42_RS11010at 2351.964 kb on - strand, within RR42_RS11010at 2351.964 kb on - strand, within RR42_RS11010at 2352.212 kb on - strandat 2352.216 kb on + strandat 2352.216 kb on + strandat 2352.216 kb on + strandat 2352.216 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
remove
2,349,341 - RR42_RS11000 0.31 -1.1
2,349,341 - RR42_RS11000 0.31 +0.4
2,349,382 + RR42_RS11000 0.35 -0.3
2,349,439 + RR42_RS11000 0.41 -1.1
2,349,439 + RR42_RS11000 0.41 +1.4
2,349,439 + RR42_RS11000 0.41 +0.3
2,349,440 - RR42_RS11000 0.41 -0.4
2,349,440 - RR42_RS11000 0.41 +1.3
2,349,440 - RR42_RS11000 0.41 +0.6
2,349,440 - RR42_RS11000 0.41 -0.1
2,349,646 + RR42_RS11000 0.62 +0.2
2,349,749 - RR42_RS11000 0.73 -0.1
2,349,796 + RR42_RS11000 0.78 -0.8
2,349,797 - RR42_RS11000 0.78 +1.2
2,350,175 + +0.4
2,350,176 - +0.3
2,350,206 - +0.2
2,350,324 + -1.8
2,350,324 + +1.0
2,350,324 + -1.1
2,350,324 + +1.0
2,350,324 + -0.9
2,350,324 + +0.5
2,350,325 - -0.1
2,350,325 - +0.7
2,350,325 - -1.2
2,350,325 - +1.0
2,350,325 - +0.9
2,350,325 - +0.2
2,350,325 - +1.1
2,350,509 - RR42_RS11005 0.16 +1.1
2,350,672 + RR42_RS11005 0.30 +0.7
2,350,672 + RR42_RS11005 0.30 -1.4
2,350,673 - RR42_RS11005 0.30 -1.6
2,350,844 + RR42_RS11005 0.45 +1.3
2,350,844 + RR42_RS11005 0.45 -0.4
2,350,844 + RR42_RS11005 0.45 -0.4
2,350,844 + RR42_RS11005 0.45 +0.4
2,351,001 + RR42_RS11005 0.59 -0.1
2,351,002 - RR42_RS11005 0.59 +0.2
2,351,473 + -1.0
2,351,473 + -0.5
2,351,473 + +1.1
2,351,473 + -0.9
2,351,473 + +1.0
2,351,474 - -1.6
2,351,787 + RR42_RS11010 0.44 +0.1
2,351,787 + RR42_RS11010 0.44 -0.8
2,351,787 + RR42_RS11010 0.44 +0.9
2,351,788 - RR42_RS11010 0.44 -2.9
2,351,859 + RR42_RS11010 0.58 +1.0
2,351,918 + RR42_RS11010 0.69 -0.4
2,351,919 - RR42_RS11010 0.70 -0.0
2,351,934 + RR42_RS11010 0.72 -0.0
2,351,934 + RR42_RS11010 0.72 -0.2
2,351,934 + RR42_RS11010 0.72 -0.5
2,351,935 - RR42_RS11010 0.73 -1.4
2,351,935 - RR42_RS11010 0.73 +2.3
2,351,964 - RR42_RS11010 0.78 +0.6
2,351,964 - RR42_RS11010 0.78 +0.4
2,352,212 - +0.2
2,352,216 + +0.1
2,352,216 + -0.6
2,352,216 + -1.5
2,352,216 + +0.6

Or see this region's nucleotide sequence